RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 LYNX1P0DP58 116 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 TNFRSF1BP20333 461 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 OR3A1P47881 315 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 OR5I1Q13606 314 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 OR2W3Q7Z3T1 314 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 BEST4Q8NFU0 473 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 OR52N1Q8NH53 320 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 KLF14Q8TD94 323 aaPredicted RBP7.26□□□□□ -1.25
HMGB1-203ENST00000341423 SCN10AQ9Y5Y9 1956 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 IGHV3-43A0A0B4J1X8 118 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 FCMRO60667 390 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 LY6G6DO95868 133 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 IGHV3-43DP0DP04 118 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 TAS2R31P59538 309 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 UBE2G1P62253 170 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 COL10A1Q03692 680 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 TRNP1Q6NT89 227 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 RANBP3Q9H6Z4 567 aaPredicted RBP7.26□□□□□ -1.25
HMGB1-203ENST00000341423 MBD2Q9UBB5 411 aa7.26□□□□□ -1.25
HMGB1-203ENST00000341423 AIREO43918 545 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF791Q3KP31 576 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 RPL22L1Q6P5R6 122 aaKnown RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 SCMH1Q96GD3 660 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 BARD1Q99728 777 aaKnown RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF275Q9NSD4 429 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 MBD3L4A6NDZ8 208 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 MBD3L3A6NE82 208 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 MBD3L5A6NJ08 208 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 HIST1H1EP10412 219 aaKnown RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 RORCP51449 518 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 BHLHA9Q7RTU4 235 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 MBD3L2Q8NHZ7 208 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF281Q9Y2X9 895 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 IGHV3-72A0A0B4J1Y9 119 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 LOC107986453A0A1B0GWG9 222 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 B3GALNT1O75752 331 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 RAB3BP20337 219 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 FUT3P21217 361 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 PRTN3P24158 256 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 RPL27AP46776 148 aaKnown RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 AKR1C8PQ5T2L2 129 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 ATPAF1Q5TC12 328 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 IQCF1Q8N6M8 205 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 OR10J6PQ8NGY7 276 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 TMEM255BQ8WV15 326 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 SLC25A31Q9H0C2 315 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 SEMA5BQ9P283 1151 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 CLPSL1A2RUU4 121 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 MAGEA13PA6NCF6 341 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 ATF1P18846 271 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 TMEM30BQ3MIR4 351 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 Q3ZCU0 254 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 IZUMO2Q6UXV1 221 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 MMD2Q8IY49 270 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 OR5A2Q8NGI9 324 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 OR8U1Q8NH10 309 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 C16orf92Q96LL3 132 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 CIB3Q96Q77 187 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 ACOT13Q9NPJ3 140 aa7.25□□□□□ -1.25
HMGB1-203ENST00000341423 MRPS18CQ9Y3D5 142 aaKnown RBP7.25□□□□□ -1.25
HMGB1-203ENST00000341423 RER1O15258 196 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 UPK3AO75631 287 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 MTNR1BP49286 362 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 RAB4BP61018 213 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 BAXQ07812 192 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 NAA40Q86UY6 237 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 LHFPL5Q8TAF8 219 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 TRIM63Q969Q1 353 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 TMEM106AQ96A25 262 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 MOB4Q9Y3A3 225 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 HSPE1-MOB4S4R3N1 261 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 IGHV2OR16-5A0A0B4J2B6 119 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 LDLRAD2Q5SZI1 272 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 LIMS2Q7Z4I7 341 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 OR8H1Q8NGG4 311 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 FEVQ99581 238 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 NIPSNAP3BQ9BS92 247 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 ASIC5Q9NY37 505 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 SPTBN4Q9H254 2564 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 HBE1P02100 147 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 OR8U9P0C7N5 309 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 TMEM177Q53S58 311 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 OR5T1Q8NG75 326 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 OR1L1Q8NH94 360 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 APH1BQ8WW43 257 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 MS4A3Q96HJ5 214 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 MEGF10Q96KG7 1140 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 B9D1Q9UPM9 204 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 WASHC3Q9Y3C0 194 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 COL11A2P13942 1736 aaPredicted RBP7.24□□□□□ -1.25
HMGB1-203ENST00000341423 TO15178 435 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 CD5LO43866 347 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 KLF7O75840 302 aaPredicted RBP7.24□□□□□ -1.25
HMGB1-203ENST00000341423 NEURL1O76050 574 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 S1PR2O95136 353 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 IGHV3-11P01762 117 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 MT-ND4P03905 459 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 ACSM1Q08AH1 577 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 DAZAP2Q15038 168 aaPredicted RBP7.24□□□□□ -1.25
HMGB1-203ENST00000341423 UTS2BQ765I0 119 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms