RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 A0A1W2PNV4 684 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 ACP1P24666 158 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 LSM6P62312 80 aaKnown RBP6.79□□□□□ -1.32
SF3B3-201ENST00000302516 OR1C1Q15619 314 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 PRICKLE4Q2TBC4 344 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 FAM78BQ5VT40 261 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 BLNKQ8WV28 456 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 VN1R1Q9GZP7 353 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 OR2D2Q9H210 308 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 CNTD2Q9H8S5 307 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 PRDM7Q9NQW5 492 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 MPC1Q9Y5U8 109 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 K7ERU9 68 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 SEC11BP0C7V7 166 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 OR3A4PP47883 348 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 OR13G1Q8NGZ3 307 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 C20orf141Q9NUB4 165 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 MDC1Q14676 2089 aaKnown RBP6.79□□□□□ -1.32
SF3B3-201ENST00000302516 MPV17LQ2QL34 196 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 NSUN5P2Q63ZY6 315 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 NFAM1Q8NET5 270 aaPredicted RBP6.79□□□□□ -1.32
SF3B3-201ENST00000302516 SNX22Q96L94 193 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 ANKRD10Q9NXR5 420 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 HCSTQ9UBK5 93 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 NPIPB8E9PQR5 432 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 FAM157BP0CG42 384 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 RPL29P47914 159 aaKnown RBP6.79□□□□□ -1.32
SF3B3-201ENST00000302516 PAFAH1B2P68402 229 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 C8orf82Q6P1X6 216 aaPredicted RBP6.79□□□□□ -1.32
SF3B3-201ENST00000302516 ALKBH3Q96Q83 286 aaPredicted RBP6.79□□□□□ -1.32
SF3B3-201ENST00000302516 ALX4Q9H161 411 aaPredicted RBP6.79□□□□□ -1.32
SF3B3-201ENST00000302516 PRRT4C9JH25 899 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 VDAC1P21796 283 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 SMAD4Q13485 552 aaKnown RBP6.79□□□□□ -1.32
SF3B3-201ENST00000302516 CEACAM16Q2WEN9 425 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 COL5A1-AS1Q5SY13 56 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 TMEM211Q6ICI0 200 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 SLC25A22Q9H936 323 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 A0A1B0GTL3 188 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 TMEM238LA0A1B0GVL6 79 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 A6NJY4 79 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 ZNF785A8K8V0 405 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 CA11O75493 328 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 GCGP01275 180 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 IGHV3-9P01782 118 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 CCL11P51671 97 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 C1QTNF6Q9BXI9 259 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 CDC42EP3Q9UKI2 254 aa6.79□□□□□ -1.32
SF3B3-201ENST00000302516 OR2T8A6NH00 312 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 GEMIN2O14893 280 aaKnown RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 CXCL10P02778 98 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 GLI4P10075 376 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 ERVS71-1P61550 626 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 BPIFA4PQ86YQ2 179 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 UBALD2Q8IYN6 164 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 H1FOOQ8IZA3 346 aaPredicted RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 UBALD1Q8TB05 177 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 COPS9Q8WXC6 57 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 A0A1W2PPC4 97 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 NRG2O14511 850 aaPredicted RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 NDUFB3O43676 98 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 PEX11BO96011 259 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 GGTLC2Q14390 218 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 C9orf152Q5JTZ5 239 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 C1orf174Q8IYL3 243 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 C11orf42Q8N5U0 333 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 CXCL16Q9H2A7 254 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 ING1Q9UK53 422 aaPredicted RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 ICAM5Q9UMF0 924 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 LOXL2Q9Y4K0 774 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 LOC285556D6RIA3 1793 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 SNRNP200O75643 2136 aaKnown RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 NYNRINQ9P2P1 1898 aaKnown RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 MT-ND6P03923 174 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 HIST1H1BP16401 226 aaKnown RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 MLF1P58340 268 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 HLA-DRB5Q30154 266 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 FAM109BQ6ICB4 259 aaPredicted RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 OR4C3Q8NH37 302 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 MCHR2Q969V1 340 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 KCNE3Q9Y6H6 103 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 SBF1O95248 1867 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 PXNP49023 591 aaPredicted RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 VEGFBP49765 207 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 UBE2V2Q15819 145 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 PARM1Q6UWI2 310 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 SLC35E3Q7Z769 313 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 TBC1D26Q86UD7 250 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 OR1L6Q8NGR2 347 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 NUBPLQ8TB37 319 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 ABHD1Q96SE0 405 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 SF3B5Q9BWJ5 86 aaKnown RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 DSPPQ9NZW4 1301 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 NGFP01138 241 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 HIST1H1EP10412 219 aaKnown RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 PRDX4Q13162 271 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 LIMS2Q7Z4I7 341 aa6.78□□□□□ -1.32
SF3B3-201ENST00000302516 HSD17B10Q99714 261 aaKnown RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 ELF5Q9UKW6 265 aaPredicted RBP6.78□□□□□ -1.32
SF3B3-201ENST00000302516 BRCA1P38398 1863 aaKnown RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms