RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 USF2Q15853 346 aaPredicted RBP11□□□□□ -0.65
LIG1-201ENST00000263274 HAGHQ16775 308 aa11□□□□□ -0.65
LIG1-201ENST00000263274 SLC25A26Q70HW3 274 aa11□□□□□ -0.65
LIG1-201ENST00000263274 RPS19BP1Q86WX3 136 aaKnown RBP11□□□□□ -0.65
LIG1-201ENST00000263274 ZNF695Q8IW36 515 aa11□□□□□ -0.65
LIG1-201ENST00000263274 C5orf52A6NGY3 159 aa11□□□□□ -0.65
LIG1-201ENST00000263274 CRYM-AS1A6NIL9 109 aa11□□□□□ -0.65
LIG1-201ENST00000263274 CNN3Q15417 329 aaKnown RBP11□□□□□ -0.65
LIG1-201ENST00000263274 BTNL8Q6UX41 500 aa11□□□□□ -0.65
LIG1-201ENST00000263274 SSX3Q99909 188 aa11□□□□□ -0.65
LIG1-201ENST00000263274 CHCHD2Q9Y6H1 151 aaPredicted RBP11□□□□□ -0.65
LIG1-201ENST00000263274 A0A096LPE4 126 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 A0A1W2PPZ6 126 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 C9J4A7 227 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 FCGR3AP08637 254 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 CCL4P13236 92 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 PPP1CCP36873 323 aaKnown RBP10.99□□□□□ -0.65
LIG1-201ENST00000263274 RPS10P46783 165 aaKnown RBP10.99□□□□□ -0.65
LIG1-201ENST00000263274 CXCL12P48061 93 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 SSR4P51571 173 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 CASP6P55212 293 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 RSPO1Q2MKA7 263 aaPredicted RBP10.99□□□□□ -0.65
LIG1-201ENST00000263274 CEACAM16Q2WEN9 425 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 LGI3Q8N145 548 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 OR10AD1Q8NGE0 317 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 Q96M66 194 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 PLEKHA2Q9HB19 425 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 WFDC1Q9HC57 220 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 PARP11Q9NR21 331 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 C19orf12Q9NSK7 152 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 ZNF729A6NN14 1252 aaPredicted RBP10.99□□□□□ -0.65
LIG1-201ENST00000263274 COLCA2A8K830 154 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 H3BP45 60 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 SSSCA1O60232 199 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 CARD18P57730 90 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 RPS18P62269 152 aaKnown RBP10.99□□□□□ -0.65
LIG1-201ENST00000263274 SKA3Q8IX90 412 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 OSR2Q8N2R0 312 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 OR2G3Q8NGZ4 309 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 MMP24Q9Y5R2 645 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 NSG1A0A0A6YYJ2 146 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 AADACP22760 399 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 SOHLH1Q5JUK2 328 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 ZNF468Q5VIY5 522 aaPredicted RBP10.99□□□□□ -0.65
LIG1-201ENST00000263274 CARFQ8N187 725 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 RARRES2Q99969 163 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 BCO1Q9HAY6 547 aa10.99□□□□□ -0.65
LIG1-201ENST00000263274 CPAMD8Q8IZJ3 1885 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 IGKV1-27A0A075B6S5 117 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 A0A0U1RQV5 110 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 HSD17B6O14756 317 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 CCL1P22362 96 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 EIF2S3P41091 472 aaKnown RBP10.98□□□□□ -0.65
LIG1-201ENST00000263274 SURF2Q15527 256 aaPredicted RBP10.98□□□□□ -0.65
LIG1-201ENST00000263274 FREM1Q5H8C1 2179 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 PRR18Q8N4B5 295 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 SLC35G3Q8N808 338 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 SUMF2Q8NBJ7 301 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 OR1F12Q8NHA8 337 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 HIST1H2BAQ96A08 127 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 SRXN1Q9BYN0 137 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 RBM7Q9Y580 266 aaKnown RBP10.98□□□□□ -0.65
LIG1-201ENST00000263274 IGLV3-12A0A075B6K2 115 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 IGHV3-64DA0A0J9YX35 117 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 UBE2CO00762 179 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 WIPI1Q5MNZ9 446 aaPredicted RBP10.98□□□□□ -0.65
LIG1-201ENST00000263274 RTL6Q6ICC9 239 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 DMRTC2Q8IXT2 367 aaPredicted RBP10.98□□□□□ -0.65
LIG1-201ENST00000263274 ABHD14AQ9BUJ0 271 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 PISDQ9UG56 409 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 CACFD1Q9UGQ2 172 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 ADAMTS9Q9P2N4 1935 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 KIAA2026Q5HYC2 2103 aa10.98□□□□□ -0.65
LIG1-201ENST00000263274 NKX2-6A6NCS4 301 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 C3orf80F5H4A9 247 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 NPBWR2P48146 333 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 SLC25A53Q5H9E4 307 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 ZNF561Q8N587 486 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 LURAP1Q96LR2 239 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 PBDC1Q9BVG4 233 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 R4GN57 208 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 CACNA1GO43497 2377 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 C10orf142B7Z368 130 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 P04436 131 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 ZNF16P17020 682 aaPredicted RBP10.97□□□□□ -0.65
LIG1-201ENST00000263274 S100A2P29034 98 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 NKX2-1P43699 371 aaPredicted RBP10.97□□□□□ -0.65
LIG1-201ENST00000263274 ZNF92Q03936 586 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 HGFACQ04756 655 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 TMEM187Q14656 261 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 LIAT1Q6ZQX7 453 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 UBALD1Q8TB05 177 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 GGACTQ9BVM4 153 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 WNT5BQ9H1J7 359 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 V9GYS6 101 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 CEACAM18A8MTB9 384 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 GPR137BO60478 399 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 VAMP5O95183 116 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 CD5P06127 495 aa10.97□□□□□ -0.65
LIG1-201ENST00000263274 NDUFB7P17568 137 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms