RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 NOTOA8MTQ0 251 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 SIGLEC5O15389 551 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 ST8SIA5O15466 376 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 ADAM20O43506 726 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 TFF1P04155 84 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 DUX4L2P0CJ85 424 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 DUX4L3P0CJ86 424 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 DUX4L4P0CJ87 422 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 DUX4L5P0CJ88 424 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 DUX4L6P0CJ89 424 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 DUX4L7P0CJ90 424 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 CALCBP10092 127 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 RPS2P15880 293 aaKnown RBP16.42■□□□□ 0.22
UPF3A-211ENST00000618700 CEBPDP49716 269 aaPredicted RBP16.42■□□□□ 0.22
UPF3A-211ENST00000618700 VBP1P61758 197 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 QRFPP83859 136 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 GPR176Q14439 515 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 RAB11BQ15907 218 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 SLC22A6Q4U2R8 563 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 SPIN3Q5JUX0 258 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 DUX4L9Q6RFH8 374 aaPredicted RBP16.42■□□□□ 0.22
UPF3A-211ENST00000618700 FIP1L1Q6UN15 594 aaKnown RBP16.42■□□□□ 0.22
UPF3A-211ENST00000618700 CD177Q8N6Q3 437 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 NEIL1Q96FI4 390 aaPredicted RBP16.42■□□□□ 0.22
UPF3A-211ENST00000618700 SDSLQ96GA7 329 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 GAFA1Q96PS6 74 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 CCL13Q99616 98 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 DUX4Q9UBX2 424 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 STEAP1Q9UHE8 339 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 PCDHB10Q9UN67 800 aa16.42■□□□□ 0.22
UPF3A-211ENST00000618700 NKX6-3A6NJ46 265 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 FCN3O75636 299 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 HTR3BO95264 441 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 BPNT1O95861 308 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 IL1AP01583 271 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 SERPINA2P20848 420 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 PRDX2P32119 198 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 TMEM249Q2WGJ8 235 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 HES5Q5TA89 166 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 ZNF841Q6ZN19 808 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 CLVS1Q8IUQ0 354 aaPredicted RBP16.41■□□□□ 0.22
UPF3A-211ENST00000618700 OSR2Q8N2R0 312 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 FAM216BQ8N7L0 139 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 TMEM104Q8NE00 496 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 OR8B3Q8NGG8 313 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 OR8B2Q96RD0 313 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 PCDHB16Q9NRJ7 776 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 ACANP16112 2415 aa16.41■□□□□ 0.22
UPF3A-211ENST00000618700 FAM157AC9JC47 383 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 TMPRSS2O15393 492 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 HAND1O96004 215 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 CSTBP04080 98 aaKnown RBP16.4■□□□□ 0.22
UPF3A-211ENST00000618700 HEXAP06865 529 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 VSIG8P0DPA2 414 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 TMBIM6P55061 237 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 CAV3P56539 151 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 CLDN12P56749 244 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 RBM11P57052 281 aaKnown RBP16.4■□□□□ 0.22
UPF3A-211ENST00000618700 SEC61A1P61619 476 aaKnown RBP16.4■□□□□ 0.22
UPF3A-211ENST00000618700 MXD1Q05195 221 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 BLMHQ13867 455 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 IL13RA2Q14627 380 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 P2RY14Q15391 338 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 PIGYQ3MUY2 71 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 SFXN4Q6P4A7 337 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 NLRC3Q7RTR2 1065 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 SLC36A1Q7Z2H8 476 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 RAB2BQ8WUD1 216 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 MRPS24Q96EL2 167 aaKnown RBP16.4■□□□□ 0.22
UPF3A-211ENST00000618700 BCL7BQ9BQE9 202 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 KCNK15Q9H427 330 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 OR14J1Q9UGF5 321 aa16.4■□□□□ 0.22
UPF3A-211ENST00000618700 MED13LQ71F56 2210 aa16.39■□□□□ 0.22
UPF3A-211ENST00000618700 TMEM14DPA8MWL7 114 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 A8MXK9 166 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 SMAD7O15105 426 aaKnown RBP16.39■□□□□ 0.21
UPF3A-211ENST00000618700 IGHV4-31P0DP07 118 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 GTF2F2P13984 249 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 SELLP14151 372 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 DUSP1P28562 367 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 RPS19P39019 145 aaKnown RBP16.39■□□□□ 0.21
UPF3A-211ENST00000618700 RANBP1P43487 201 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 GABRA2P47869 451 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 PITPNBP48739 271 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 SNU13P55769 128 aaKnown RBP16.39■□□□□ 0.21
UPF3A-211ENST00000618700 IL13RA1P78552 427 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 OR51D1Q8NGF3 324 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 FAM3DQ96BQ1 224 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 MED30Q96HR3 178 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 OCSTAMPQ9BR26 566 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 CST11Q9H112 138 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 FBLN5Q9UBX5 448 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 MAB21L2Q9Y586 359 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 CEPT1Q9Y6K0 416 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 F8P00451 2351 aa16.39■□□□□ 0.21
UPF3A-211ENST00000618700 YLPM1P49750 1951 aaKnown RBP16.38■□□□□ 0.21
UPF3A-211ENST00000618700 KIAA1324LA8MWY0 1029 aaPredicted RBP16.38■□□□□ 0.21
UPF3A-211ENST00000618700 LDLRAD4O15165 306 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 ZNF737O75373 536 aa16.38■□□□□ 0.21
UPF3A-211ENST00000618700 CHRM2P08172 466 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms