RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 Q9H521 79 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 CNTD2Q9H8S5 307 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 ING3Q9NXR8 418 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 OR5V1Q9UGF6 321 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 RPUSD1Q9UJJ7 312 aaKnown RBP11.12□□□□□ -0.63
LINC00540-202ENST00000616974 TRRAPQ9Y4A5 3859 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 KIR2DS1A0A191URI9 304 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 SMIM30A4D0T7 59 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 SIRPB1O00241 398 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 BDKRB2P30411 391 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 ZNF93P35789 620 aaPredicted RBP11.12□□□□□ -0.63
LINC00540-202ENST00000616974 BRD3OSQ6XYD6 125 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 ASCC1Q8N9N2 400 aaKnown RBP11.12□□□□□ -0.63
LINC00540-202ENST00000616974 ITFG2Q969R8 447 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 MUL1Q969V5 352 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 C1orf147Q96MC9 270 aaPredicted RBP11.12□□□□□ -0.63
LINC00540-202ENST00000616974 PCGF1Q9BSM1 259 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 RNF167Q9H6Y7 350 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 HMG20AQ9NP66 347 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 TMEM138Q9NPI0 162 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 LRRC42Q9Y546 428 aa11.12□□□□□ -0.63
LINC00540-202ENST00000616974 HSPB6O14558 160 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 KDM4BO94953 1096 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 ALX3O95076 343 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 CD1AP06126 327 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 MMP9P14780 707 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 FSTP19883 344 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 SCN1BQ07699 218 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 NEDD8Q15843 81 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 RUSC1-AS1Q66K80 236 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 BRICD5Q6PL45 260 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 TCF23Q7RTU1 214 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 SLC36A1Q7Z2H8 476 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 LRRTM1Q86UE6 522 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 Q8N7P7 452 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 TBX15Q96SF7 602 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 SIRT7Q9NRC8 400 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 TMEM160Q9NX00 188 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 CDC42EP3Q9UKI2 254 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 BLOC1S6Q9UL45 172 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 ANK2Q01484 3957 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 TRAV40A0A0B4J280 105 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 NDUFB3O43676 98 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 NDUFA2O43678 99 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 HAND1O96004 215 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 FSHBP01225 129 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 CCL3L1P16619 93 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 SRD5A1P18405 259 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 PAX6P26367 422 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 PSMB9P28065 219 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 PTGFRP43088 359 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 CAPZA1P52907 286 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 KLRD1Q13241 179 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 ZNF273Q14593 569 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 OR10K2Q6IF99 312 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 PNKDQ8N490 385 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 JAGN1Q8N5M9 183 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 TMEM104Q8NE00 496 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 OR4S1Q8NGB4 309 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 AUP1Q9Y679 476 aa11.11□□□□□ -0.63
LINC00540-202ENST00000616974 PKD1L1Q8TDX9 2849 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 MDFIC2A0A1B0GVS7 189 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 OR2H2O95918 312 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 KNG1P01042 644 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 TK1P04183 234 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 TGFBR1P36897 503 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 PPP3R1P63098 170 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 KCNJ8Q15842 424 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 UTF1Q5T230 341 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 Q6P435 159 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 ZNF773Q6PK81 442 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 ZNF367Q7RTV3 350 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 NR2C2APQ86WQ0 139 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 MKXQ8IYA7 352 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 RASL12Q9NYN1 266 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 ZNF69Q9UC07 566 aa11.1□□□□□ -0.63
LINC00540-202ENST00000616974 VWFP04275 2813 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 PPIAL4CA0A0B4J2A2 164 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 A0A1W2PRD5 423 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 A0A1W2PRF3 423 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 A0A1W2PRM7 423 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 NKX6-3A6NJ46 265 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 GPX5O75715 221 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 UCHL1P09936 223 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 PPIAL4GP0DN37 164 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 SERPINA2P20848 420 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 SRP14P37108 136 aaKnown RBP11.09□□□□□ -0.63
LINC00540-202ENST00000616974 EDDM3AQ14507 147 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 ZNF146Q15072 292 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 SLC22A6Q4U2R8 563 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 LRRC10Q5BKY1 277 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 UBE2UQ5VVX9 321 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 BPIFB2Q8N4F0 458 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 C11orf42Q8N5U0 333 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 LY6G5BQ8NDX9 201 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 TAF15Q92804 592 aaKnown RBP eCLIP11.09□□□□□ -0.63
LINC00540-202ENST00000616974 SIRPDQ9H106 197 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 PPA2Q9H2U2 334 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 BANF2Q9H503 90 aa11.09□□□□□ -0.63
LINC00540-202ENST00000616974 ONECUT1Q9UBC0 465 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms