RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NOXO1Q8NFA2 376 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 ZDHHC12Q96GR4 267 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 CHST5Q9GZS9 411 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 NAA60Q9H7X0 242 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 GFOD1Q9NXC2 390 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 WNT16Q9UBV4 365 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 MMACHCQ9Y4U1 282 aa15.99■□□□□ 0.15
UPF1-210ENST00000600689 URB1O60287 2271 aaKnown RBP15.99■□□□□ 0.15
UPF1-210ENST00000600689 H3BP45 60 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 CD63P08962 238 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 NKX6-1P78426 367 aaPredicted RBP15.98■□□□□ 0.15
UPF1-210ENST00000600689 THEM4Q5T1C6 240 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 COL13A1Q5TAT6 717 aaPredicted RBP15.98■□□□□ 0.15
UPF1-210ENST00000600689 ZNF429Q86V71 674 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 RBM24Q9BX46 236 aaKnown RBP15.98■□□□□ 0.15
UPF1-210ENST00000600689 UCK1Q9HA47 277 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 FBLN5Q9UBX5 448 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 FER1L5A0AVI2 2057 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 CEP192Q8TEP8 1941 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 CELSR3Q9NYQ7 3312 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST1H2BKO60814 126 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST1H2BJP06899 126 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST1H2BOP23527 126 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST1H2BBP33778 126 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST1H2BDP58876 126 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST1H2BCP62807 126 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 EWSR1Q01844 656 aaKnown RBP eCLIP15.98■□□□□ 0.15
UPF1-210ENST00000600689 GNMTQ14749 295 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST2H2BEQ16778 126 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 PIGYQ3MUY2 71 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST1H2BHQ93079 126 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST1H2BNQ99877 126 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 HIST1H2BMQ99879 126 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 CRLF2Q9HC73 371 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 SLC2A9Q9NRM0 540 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 PPP1R2P9O14990 202 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 PIAS2O75928 621 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 PGA4P0DJD7 388 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 PGA3P0DJD8 388 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 GUCA1AP43080 201 aaPredicted RBP15.98■□□□□ 0.15
UPF1-210ENST00000600689 TMEM187Q14656 261 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 SLC35G3Q8N808 338 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 SLC39A7Q92504 469 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 C14orf144Q96I85 54 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 SDHAF3Q9NRP4 125 aa15.98■□□□□ 0.15
UPF1-210ENST00000600689 IGHV1OR21-1A0A087WYE8 117 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 NKX2-6A6NCS4 301 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 SERPINE3A8MV23 424 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 C17orf67Q0P5P2 114 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 KHDC3LQ587J8 217 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 CRIP3Q6Q6R5 217 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 RHBDD1Q8TEB9 315 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 GINS3Q9BRX5 216 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 MRPL13Q9BYD1 178 aaKnown RBP15.97■□□□□ 0.15
UPF1-210ENST00000600689 FAM89BQ8N5H3 189 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 HPSE2Q8WWQ2 592 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 METTL7AQ9H8H3 244 aa15.97■□□□□ 0.15
UPF1-210ENST00000600689 NOSIPQ9Y314 301 aaKnown RBP15.97■□□□□ 0.15
UPF1-210ENST00000600689 ANKUB1A6NFN9 424 aa15.96■□□□□ 0.15
UPF1-210ENST00000600689 PATE4P0C8F1 98 aa15.96■□□□□ 0.15
UPF1-210ENST00000600689 NDUFB7P17568 137 aa15.96■□□□□ 0.15
UPF1-210ENST00000600689 ELOBQ15370 118 aa15.96■□□□□ 0.15
UPF1-210ENST00000600689 USF2Q15853 346 aaPredicted RBP15.96■□□□□ 0.15
UPF1-210ENST00000600689 SLC25A45Q8N413 288 aa15.96■□□□□ 0.15
UPF1-210ENST00000600689 NUDT16L1Q9BRJ7 211 aaKnown RBP15.96■□□□□ 0.15
UPF1-210ENST00000600689 PNRC2Q9NPJ4 139 aaKnown RBP15.96■□□□□ 0.15
UPF1-210ENST00000600689 ALKBH4Q9NXW9 302 aa15.96■□□□□ 0.15
UPF1-210ENST00000600689 PLEK2Q9NYT0 353 aa15.96■□□□□ 0.15
UPF1-210ENST00000600689 G3V3Y1 287 aa15.96■□□□□ 0.15
UPF1-210ENST00000600689 SNX22Q96L94 193 aa15.96■□□□□ 0.15
UPF1-210ENST00000600689 TP53RKQ96S44 253 aa15.96■□□□□ 0.15
UPF1-210ENST00000600689 FREM2Q5SZK8 3169 aa15.96■□□□□ 0.14
UPF1-210ENST00000600689 IGSF23A1L1A6 192 aa15.96■□□□□ 0.14
UPF1-210ENST00000600689 HSPB6O14558 160 aa15.96■□□□□ 0.14
UPF1-210ENST00000600689 GEMIN2O14893 280 aaKnown RBP15.96■□□□□ 0.14
UPF1-210ENST00000600689 DUSP1P28562 367 aa15.96■□□□□ 0.14
UPF1-210ENST00000600689 GALNSP34059 522 aa15.96■□□□□ 0.14
UPF1-210ENST00000600689 ZP4Q12836 540 aa15.96■□□□□ 0.14
UPF1-210ENST00000600689 CXorf66Q5JRM2 361 aaPredicted RBP15.96■□□□□ 0.14
UPF1-210ENST00000600689 CADM4Q8NFZ8 388 aa15.96■□□□□ 0.14
UPF1-210ENST00000600689 OR10G3Q8NGC4 313 aa15.96■□□□□ 0.14
UPF1-210ENST00000600689 OR5C1Q8NGR4 320 aa15.96■□□□□ 0.14
UPF1-210ENST00000600689 CPAMD8Q8IZJ3 1885 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 TRBV11-1A0A0K0K1C0 115 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 OR2J2O76002 312 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 PLA2G5P39877 138 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 RAB1AP62820 205 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 SNAI3Q3KNW1 292 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 PRDM13Q9H4Q3 707 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 ZFP92A6NM28 416 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 K7N7A8 449 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 TRAF3IP2O43734 574 aaPredicted RBP15.95■□□□□ 0.14
UPF1-210ENST00000600689 UFSP2Q9NUQ7 469 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 WSB1Q9Y6I7 421 aa15.95■□□□□ 0.14
UPF1-210ENST00000600689 ZNF587BE7ETH6 402 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 PHOX2AO14813 284 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 F10P00742 488 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 RAB11AP62491 216 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 RPL23AP62750 156 aaKnown RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms