RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 COA1Q9GZY4 146 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 TUBA4BQ9H853 241 aa2.13□□□□□ -2.07
SS18-214ENST00000580003 CACNA1GO43497 2377 aa2.12□□□□□ -2.07
SS18-214ENST00000580003 CST6Q15828 149 aa2.12□□□□□ -2.07
SS18-214ENST00000580003 UBE2NLQ5JXB2 153 aa2.12□□□□□ -2.07
SS18-214ENST00000580003 SLC35D2Q76EJ3 337 aa2.12□□□□□ -2.07
SS18-214ENST00000580003 TCP10LQ8TDR4 215 aa2.12□□□□□ -2.07
SS18-214ENST00000580003 RILPQ96NA2 401 aa2.12□□□□□ -2.07
SS18-214ENST00000580003 MYCBPQ99417 103 aaPredicted RBP2.12□□□□□ -2.07
SS18-214ENST00000580003 PORCNQ9H237 461 aa2.12□□□□□ -2.07
SS18-214ENST00000580003 LRRC19Q9H756 370 aa2.12□□□□□ -2.07
SS18-214ENST00000580003 VWDEQ8N2E2 1590 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 PLXNB3Q9ULL4 1909 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 TRAPPC6AO75865 159 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 P0DMU3 169 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 FAM231AP0DMU4 169 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 FAM231CP0DMU5 169 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 TAS2R60P59551 318 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 KRTAP21-3Q3LHN1 58 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 SYT6Q5T7P8 510 aaPredicted RBP2.11□□□□□ -2.07
SS18-214ENST00000580003 UGT2A3Q6UWM9 527 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 MSRB3Q8IXL7 192 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 HS3ST5Q8IZT8 346 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 ZNF567Q8N184 647 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 OR10D4PQ8NGN7 298 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 C22orf15Q8WYQ4 148 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 QKIQ96PU8 341 aaKnown RBP eCLIP2.11□□□□□ -2.073e-6■■■■□ 23
SS18-214ENST00000580003 CHRAC1Q9NRG0 131 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 SDHAF3Q9NRP4 125 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 U3KQK5 164 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 DOCK6Q96HP0 2047 aa2.11□□□□□ -2.07
SS18-214ENST00000580003 A6NED7 52 aa2.1□□□□□ -2.07
SS18-214ENST00000580003 GTF2F2P13984 249 aa2.1□□□□□ -2.07
SS18-214ENST00000580003 TAC1P20366 129 aa2.1□□□□□ -2.07
SS18-214ENST00000580003 CSKP41240 450 aa2.1□□□□□ -2.07
SS18-214ENST00000580003 ATP6V1FQ16864 119 aa2.1□□□□□ -2.07
SS18-214ENST00000580003 SETD3Q86TU7 594 aaPredicted RBP2.1□□□□□ -2.07
SS18-214ENST00000580003 OR51A7Q8NH64 312 aa2.1□□□□□ -2.07
SS18-214ENST00000580003 NDNFQ8TB73 568 aa2.1□□□□□ -2.07
SS18-214ENST00000580003 ANP32EQ9BTT0 268 aa2.1□□□□□ -2.07
SS18-214ENST00000580003 OPN1SWP03999 348 aa2.09□□□□□ -2.07
SS18-214ENST00000580003 TNXAQ16473 311 aa2.09□□□□□ -2.07
SS18-214ENST00000580003 OTUD6AQ7L8S5 288 aa2.09□□□□□ -2.07
SS18-214ENST00000580003 DPPA2Q7Z7J5 298 aa2.09□□□□□ -2.07
SS18-214ENST00000580003 SLC38A1Q9H2H9 487 aa2.09□□□□□ -2.07
SS18-214ENST00000580003 LZTFL1Q9NQ48 299 aa2.09□□□□□ -2.07
SS18-214ENST00000580003 FLVCR2Q9UPI3 526 aa2.09□□□□□ -2.07
SS18-214ENST00000580003 RHBDD3Q9Y3P4 386 aa2.09□□□□□ -2.07
SS18-214ENST00000580003 NUP205Q92621 2012 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 OR2AT4A6NND4 320 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 CD300LBA8K4G0 201 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 M0R1B8 84 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 UPK2O00526 184 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 AKR7A2O43488 359 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 CRTAPO75718 401 aaPredicted RBP2.08□□□□□ -2.08
SS18-214ENST00000580003 PLEKHA8P1O95397 391 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 RLN2P04090 185 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 SCGB1C2P0DMR2 95 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 ZNF22P17026 224 aaPredicted RBP2.08□□□□□ -2.08
SS18-214ENST00000580003 MSR1P21757 451 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 RPL31P62899 125 aaKnown RBP2.08□□□□□ -2.08
SS18-214ENST00000580003 CLEC12AQ5QGZ9 265 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 PIP5KL1Q5T9C9 394 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 NELFCDQ8IXH7 590 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 SCGB1C1Q8TD33 95 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 TFGQ92734 400 aaPredicted RBP2.08□□□□□ -2.08
SS18-214ENST00000580003 SHCBP1LQ9BZQ2 653 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 KIR3DX1Q9H7L2 352 aa2.08□□□□□ -2.08
SS18-214ENST00000580003 IGKV1D-37A0A075B6S9 117 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 A0A0J9YYE9 177 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 TRBC1P01850 177 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 PRB1P04280 392 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 IVDP26440 423 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 OR5T3Q8NGG3 340 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 LMX1AQ8TE12 382 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 IL22Q9GZX6 179 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 OR2AG1Q9H205 316 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 BLZF1Q9H2G9 400 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 WDR55Q9H6Y2 383 aaPredicted RBP2.07□□□□□ -2.08
SS18-214ENST00000580003 C12orf4Q9NQ89 552 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 DDIT4Q9NX09 232 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 OR5V1Q9UGF6 321 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 AP3M1Q9Y2T2 418 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 PHLPP2Q6ZVD8 1323 aa2.07□□□□□ -2.08
SS18-214ENST00000580003 TMEM131Q92545 1883 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 SLC5A10A0PJK1 596 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 GYG2O15488 501 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 CGB3P0DN86 165 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 CGB7P0DN87 165 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 CTLA4P16410 223 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 HTR2CP28335 458 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 ZNF83P51522 516 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 CLDN8P56748 225 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 PSMC5P62195 406 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 IFFO1Q0D2I5 559 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 GPR176Q14439 515 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 PYCR3Q53H96 274 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 TMEM215Q68D42 235 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 DUPD1Q68J44 220 aa2.06□□□□□ -2.08
SS18-214ENST00000580003 TMCO2Q7Z6W1 182 aaPredicted RBP2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms