RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 RBM11P57052 281 aaKnown RBP8.05□□□□□ -1.12
CUX1-216ENST00000558469 FGF12P61328 243 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 SCN1BQ07699 218 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 PDCD1Q15116 288 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 TEX36Q5VZQ5 186 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 MZT2AQ6P582 158 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 METAP1DQ6UB28 335 aaPredicted RBP8.05□□□□□ -1.12
CUX1-216ENST00000558469 CLEC2AQ6UVW9 174 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 OR2W3Q7Z3T1 314 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 FAM90A1Q86YD7 464 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 SAMD12Q8N8I0 201 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 Q8NFD4 153 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 OR51T1Q8NGJ9 327 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 MCFD2Q8NI22 146 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 ACOT12Q8WYK0 555 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 MRPS24Q96EL2 167 aaKnown RBP8.05□□□□□ -1.12
CUX1-216ENST00000558469 TMEM59Q9BXS4 323 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 SLIRPQ9GZT3 109 aaKnown RBP8.05□□□□□ -1.12
CUX1-216ENST00000558469 FBLN5Q9UBX5 448 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 RAB22AQ9UL26 194 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 SPATA2Q9UM82 520 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 WIPI2Q9Y4P8 454 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 ETV7Q9Y603 341 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 DSCAML1Q8TD84 2053 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 VPS13CQ709C8 3753 aa8.05□□□□□ -1.12
CUX1-216ENST00000558469 IGKV1D-17A0A075B6S4 117 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 RFPL4AA6NLU0 287 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 RFPL4AL1F8VTS6 287 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 SH2D1BO14796 132 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 GEMIN2O14893 280 aaKnown RBP8.04□□□□□ -1.12
CUX1-216ENST00000558469 RGS5O15539 181 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 KNG1P01042 644 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 CSF3P09919 207 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 PSG2P11465 335 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 RAB6AP20340 208 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 GABRR1P24046 479 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 PRDX2P32119 198 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 MDH2P40926 338 aaKnown RBP8.04□□□□□ -1.12
CUX1-216ENST00000558469 GABRA2P47869 451 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 ART1P52961 327 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 SCAND1P57086 179 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 DSCR9P59020 149 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 RPS27AP62979 156 aaKnown RBP8.04□□□□□ -1.12
CUX1-216ENST00000558469 TAF9Q16594 264 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 CLEC12BQ2HXU8 276 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 ZNF404Q494X3 552 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 SPIN3Q5JUX0 258 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 UBE2NLQ5JXB2 153 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 LRRC28Q86X40 367 aaPredicted RBP8.04□□□□□ -1.12
CUX1-216ENST00000558469 CD177Q8N6Q3 437 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 C10orf105Q8TEF2 133 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 PTX4Q96A99 478 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 Q96M66 194 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 TMEM246Q9BRR3 403 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 NICN1Q9BSH3 213 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 PIMREGQ9BSJ6 248 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 URM1Q9BTM9 101 aaKnown RBP8.04□□□□□ -1.12
CUX1-216ENST00000558469 C6orf62Q9GZU0 229 aaPredicted RBP8.04□□□□□ -1.12
CUX1-216ENST00000558469 ATG5Q9H1Y0 275 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 NARFLQ9H6Q4 476 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 TMEM165Q9HC07 324 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 GLS2Q9UI32 602 aa8.04□□□□□ -1.12
CUX1-216ENST00000558469 NAV2Q8IVL1 2488 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 A0A075B6Q4 140 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 A0A0A6YYD4 124 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 METTL21EPA6NDL7 271 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 NDUFS8O00217 210 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 SIRPB1O00241 398 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 CTDSP2O14595 271 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 DEGS1O15121 323 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 HPGDSO60760 199 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 OR7C1O76099 320 aaPredicted RBP8.03□□□□□ -1.12
CUX1-216ENST00000558469 FSTL3O95633 263 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 HAND1O96004 215 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 VEGFCP49767 419 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 DYNC1I2Q13409 638 aaKnown RBP8.03□□□□□ -1.12
CUX1-216ENST00000558469 IKZF1Q13422 519 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 IL13RA2Q14627 380 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 ZNF146Q15072 292 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 KCNJ8Q15842 424 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 NHLRC3Q5JS37 347 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 Q5PR19 223 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 STUMQ69YW2 141 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 Q6P435 159 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 LYPD2Q6UXB3 125 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 DNM1P46Q6ZS02 220 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 LINC00596Q86U02 117 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 BIVMQ86UB2 503 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 CMTM4Q8IZR5 234 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 MUC20Q8N307 709 aaPredicted RBP8.03□□□□□ -1.12
CUX1-216ENST00000558469 ANGPTL6Q8NI99 470 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 SLC25A38Q96DW6 304 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 CCL13Q99616 98 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 TM2D1Q9BX74 207 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 BPESC1Q9GZL8 116 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 NXF2Q9GZY0 626 aaKnown RBP8.03□□□□□ -1.12
CUX1-216ENST00000558469 LPAR5Q9H1C0 372 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 RHBDL2Q9NX52 303 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 ZNF581Q9P0T4 197 aa8.03□□□□□ -1.12
CUX1-216ENST00000558469 PCDHB10Q9UN67 800 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms