RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 VCXQ9H320 206 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 NEK6Q9HC98 313 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 PLCXD1Q9NUJ7 323 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 FKBP14Q9NWM8 211 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 PCDHGB5Q9Y5G0 923 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 A0A1W2PPK0 400 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 IRGMA1A4Y4 181 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 PTGES3LE9PB15 166 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 K7N7A8 449 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 PSPNO60542 156 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 HAND1O96004 215 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 HCKP08631 526 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 TMEM225BP0DP42 221 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 PAX6P26367 422 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 ZP1P60852 638 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 RPS11P62280 158 aaKnown RBP eCLIP9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 KISS1Q15726 138 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 CCDC58Q4VC31 144 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 C6orf141Q5SZD1 244 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 ZNF529Q6P280 563 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 CMTM4Q8IZR5 234 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 STX19Q8N4C7 294 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 TPRX1Q8N7U7 411 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 OR4S1Q8NGB4 309 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 OR5D14Q8NGL3 314 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 GPR148Q8TDV2 347 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 ZFAND2BQ8WV99 257 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 GCDHQ92947 438 aaPredicted RBP9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 ZDHHC16Q969W1 377 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 PGLYRP3Q96LB9 341 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 PRDM13Q9H4Q3 707 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 HMG20AQ9NP66 347 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 CHCHD3Q9NX63 227 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 CNOT2Q9NZN8 540 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 ZNF581Q9P0T4 197 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 GSTK1Q9Y2Q3 226 aa9.48□□□□□ -0.89
CCDC88C-208ENST00000554165 KIAA2026Q5HYC2 2103 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 TRBV23-1A0A0A0MS06 115 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 MAGEA13PA6NCF6 341 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 SIRPB1O00241 398 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 KDM4BO94953 1096 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 CHRM2P08172 466 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 MELTFP08582 738 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 DLX6P56179 175 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 EDDM3BP56851 147 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 SCN1BQ07699 218 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 EDDM3AQ14507 147 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 Q6YL49 198 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 ZNF782Q6ZMW2 699 aaPredicted RBP9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 TCF23Q7RTU1 214 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 SATL1Q86VE3 508 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 OR10K1Q8NGX5 313 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 TMEM106AQ96A25 262 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 SMIM19Q96E16 107 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 METTL8Q9H825 291 aaKnown RBP9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 ZNF281Q9Y2X9 895 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 ANK2Q01484 3957 aa9.47□□□□□ -0.89
CCDC88C-208ENST00000554165 DSCAML1Q8TD84 2053 aa9.46□□□□□ -0.89
CCDC88C-208ENST00000554165 TRAV8-7A0A075B6U6 113 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 TRBV5-5A0A0J9YX44 114 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 TMEM89A2RUT3 159 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 H0YJX3 145 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 M0R1W7 72 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 GABRPO00591 440 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 NPFFO15130 113 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 ALX3O95076 343 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 OR2H2O95918 312 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 CYB5AP00167 134 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 IGHV4-59P01825 116 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 CDK1P06493 297 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 RAB3AP20336 220 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 OMGP23515 440 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 GABRR1P24046 479 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 SAA4P35542 130 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 OR3A1P47881 315 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 OR3A4PP47883 348 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 INSL4Q14641 139 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 ZNF146Q15072 292 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 METAP1DQ6UB28 335 aaPredicted RBP9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 IZUMO2Q6UXV1 221 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 C1orf122Q6ZSJ8 110 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 OR8H2Q8N162 312 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 NANOGP1Q8N7R0 232 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 AJUBAQ96IF1 538 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 SNX22Q96L94 193 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 DMRTB1Q96MA1 342 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 OR14A2Q96R54 314 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 OR5M11Q96RB7 305 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 NR1H4Q96RI1 486 aaPredicted RBP9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 CHIAQ9BZP6 476 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 UNKLQ9H9P5 680 aaKnown RBP9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 ING3Q9NXR8 418 aa9.46□□□□□ -0.9
CCDC88C-208ENST00000554165 TRBV5-7A0A0A0MS05 114 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 H0YHG0 523 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 PIN1P1O15428 100 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 CDRT1O95170 752 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 RNASE1P07998 156 aaKnown RBP9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 CELP19835 753 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 COX7A1P24310 79 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 BMXP51813 675 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms