RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 HNRNPA3P51991 378 aaKnown RBP3.26□□□□□ -1.89
MCF2-210ENST00000536274 TRA2BP62995 288 aaKnown RBP3.26□□□□□ -1.89
MCF2-210ENST00000536274 TGM3Q08188 693 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 MESP2Q0VG99 397 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 SLAQ13239 276 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 SRSF7Q16629 238 aaKnown RBP eCLIP3.26□□□□□ -1.89
MCF2-210ENST00000536274 SMIM21Q3B7S5 101 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 SNAI3Q3KNW1 292 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 POM121L1PQ3SYA9 428 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 KIAA0895LQ68EN5 471 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 PRR27Q6MZM9 219 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 SLC35D2Q76EJ3 337 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 MRGPRGQ86SM5 289 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 TMEM229BQ8NBD8 167 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 POC1AQ8NBT0 407 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 ZNF738Q8NE65 137 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 OR2M3Q8NG83 312 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 RNF128Q8TEB7 428 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 ORAOV1Q8WV07 137 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 ASB10Q8WXI3 467 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 TMEM234Q8WY98 164 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 CORO2AQ92828 525 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 MRPL24Q96A35 216 aaKnown RBP3.26□□□□□ -1.89
MCF2-210ENST00000536274 PRSS27Q9BQR3 290 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 RTBDNQ9BSG5 229 aaPredicted RBP3.26□□□□□ -1.89
MCF2-210ENST00000536274 VN1R1Q9GZP7 353 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 GLIPR2Q9H4G4 154 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 PLSCR4Q9NRQ2 329 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 LRFN1Q9P244 771 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 LRIT1Q9P2V4 623 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 DKK4Q9UBT3 224 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 VAX2Q9UIW0 290 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 HCFC2Q9Y5Z7 792 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 KMT2BQ9UMN6 2715 aaPredicted RBP3.26□□□□□ -1.89
MCF2-210ENST00000536274 CACNA1AO00555 2505 aa3.26□□□□□ -1.89
MCF2-210ENST00000536274 IGHV2OR16-5A0A0B4J2B6 119 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 EDDM13A0A1B0GTR0 161 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 PRRT4C9JH25 899 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 ETV2O00321 342 aaPredicted RBP3.25□□□□□ -1.89
MCF2-210ENST00000536274 PLPP1O14494 284 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 SLC16A5O15375 505 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 TMPRSS11DO60235 418 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 HYPMO75409 117 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 GATA3P23771 443 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 IMPA1P29218 277 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 CD52P31358 61 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 PRLHRP49683 370 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 NCBP2P52298 156 aaKnown RBP eCLIP3.25□□□□□ -1.89
MCF2-210ENST00000536274 TAF10Q12962 218 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 PDE7AQ13946 482 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 Q499Y3 187 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 LCN12Q6JVE5 192 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 VWA1Q6PCB0 445 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 PRSS57Q6UWY2 283 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 MARCH3Q86UD3 253 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 C1orf210Q8IVY1 113 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 ZNF440Q8IYI8 595 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 TMEM217Q8N7C4 229 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 OR2G3Q8NGZ4 309 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 OR4K15Q8NH41 348 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 WBP2Q969T9 261 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 ELSPBP1Q96BH3 223 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 LGR4Q9BXB1 951 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 RTN4RQ9BZR6 473 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 COMMD4Q9H0A8 199 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 RBKSQ9H477 322 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 TMEM9BQ9NQ34 198 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 DMRT3Q9NQL9 472 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 CMC2Q9NRP2 79 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 TAS2R4Q9NYW5 299 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 THYN1Q9P016 225 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 AK3Q9UIJ7 227 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 OSGIN2Q9Y236 505 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 POMT1Q9Y6A1 747 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 PIEZO1Q92508 2521 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 LOC101059948A0A1B0GTJ6 334 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 A0A1W2PNR3 127 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 A0A1W2PP11 408 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 NPIPB15A6NHN6 443 aaPredicted RBP3.25□□□□□ -1.89
MCF2-210ENST00000536274 MMP23AO75900 390 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 ONECUT2O95948 504 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 TTRP02766 147 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 NGFRP08138 427 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 EGR1P18146 543 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 PSMB5P28074 263 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 RPS4XP62701 263 aaKnown RBP3.25□□□□□ -1.89
MCF2-210ENST00000536274 DMWDQ09019 674 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 FOXE3Q13461 319 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 MLF2Q15773 248 aaPredicted RBP3.25□□□□□ -1.89
MCF2-210ENST00000536274 RAB11BQ15907 218 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 TMEM177Q53S58 311 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 AWAT2Q6E213 333 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 LILRA6Q6PI73 481 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 LCN15Q6UWW0 184 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 RNF44Q7L0R7 432 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 NKAIN3Q8N8D7 197 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 EXD3Q8N9H8 876 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 OR11L1Q8NGX0 322 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 GPR146Q96CH1 333 aa3.25□□□□□ -1.89
MCF2-210ENST00000536274 SLC46A1Q96NT5 459 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms