RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	TNFAIP8L1	Q8WVP5	186 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	NRGN	Q92686	78 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	GALM	Q96C23	342 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	MS4A6E	Q96DS6	147 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	PIK3IP1	Q96FE7	263 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	GPR82	Q96P67	336 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	TSPAN32	Q96QS1	320 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	MRPL57	Q9BQC6	102 aa	Known RBP	4.82	□□□□□ -1.64
CD44-231	ENST00000531110	KRTAP1-5	Q9BYS1	174 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	OR51I1	Q9H343	314 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	CDH20	Q9HBT6	801 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	LYRM4	Q9HD34	91 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	B3GAT2	Q9NPZ5	323 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	SDR39U1	Q9NRG7	319 aa	Predicted RBP	4.82	□□□□□ -1.64
CD44-231	ENST00000531110	TXNL4B	Q9NX01	149 aa	Known RBP	4.82	□□□□□ -1.64
CD44-231	ENST00000531110	P2RX2	Q9UBL9	471 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	LAMTOR2	Q9Y2Q5	125 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	WIPI2	Q9Y4P8	454 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	PLXND1	Q9Y4D7	1925 aa		4.82	□□□□□ -1.64
CD44-231	ENST00000531110	KIDINS220	Q9ULH0	1771 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	ALS2	Q96Q42	1657 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	SMIM30	A4D0T7	59 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	ARRDC5	A6NEK1	342 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	ANKUB1	A6NFN9	424 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	IGLON5	A6NGN9	336 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	NPIPB15	A6NHN6	443 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	FAM183A	A6NL82	134 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110		E7EQ34	232 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	TAAR5	O14804	337 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	AZIN1	O14977	448 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	SLC31A1	O15431	190 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	P2RX6	O15547	441 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	SNAI2	O43623	268 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	SYNGR3	O43761	229 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	FOXH1	O75593	365 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	UPK3A	O75631	287 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	FAM157C	P0CG43	387 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	C8orf88	P0DMB2	117 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	CEACAM1	P13688	526 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	CTSE	P14091	401 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	FUT3	P21217	361 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	HTR1F	P30939	366 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	GABRA5	P31644	462 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	ACVR1B	P36896	505 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	PAFAH1B2	P68402	229 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	SRPX	P78539	464 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	RPL24	P83731	157 aa	Known RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	PNRC1	Q12796	327 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	EIF2B1	Q14232	305 aa	Known RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF235	Q14590	738 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	RGN	Q15493	299 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	SPHAR	Q15513	63 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	EXT1	Q16394	746 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	GLT8D1	Q68CQ7	371 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	MRPL54	Q6P161	138 aa	Known RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	ASCL4	Q6XD76	172 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF705A	Q6ZN79	300 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	TMEM91	Q6ZNR0	172 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	UBALD2	Q8IYN6	164 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	RNF175	Q8N4F7	328 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	C2orf73	Q8N5S3	287 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	FAM24B	Q8N5W8	94 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	TCTEX1D1	Q8N7M0	179 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	OR2Z1	Q8NG97	314 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	HMGCLL1	Q8TB92	370 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	HAVCR2	Q8TDQ0	301 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	THEM6	Q8WUY1	208 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	FAM46B	Q96A09	425 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	RERG	Q96A58	199 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	CIB3	Q96Q77	187 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	ABHD1	Q96SE0	405 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	SLC25A21	Q9BQT8	299 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	FAIM2	Q9BWQ8	316 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	SPANXD	Q9BXN6	97 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	TMEM126A	Q9H061	195 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	TBC1D17	Q9HA65	648 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	BPIFA1	Q9NP55	256 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	LTB4R2	Q9NPC1	389 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	SLC52A3	Q9NQ40	469 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	FKBP11	Q9NYL4	201 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF580	Q9UK33	172 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	FARSA	Q9Y285	508 aa	Known RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	COQ4	Q9Y3A0	265 aa		4.81	□□□□□ -1.64
CD44-231	ENST00000531110	COL1A1	P02452	1464 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110	SIPA1L3	O60292	1781 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-231	ENST00000531110		A0A0G2JN53	185 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110		A0A1W2PRS3	328 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	TMEM129	A0AVI4	362 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110		H0Y980	276 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110		J3KR12	359 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	GNGT2	O14610	69 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SIVA1	O15304	175 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	XRCC3	O43542	346 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	CS	O75390	466 aa	Known RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SCGN	O76038	276 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	CDRT1	O95170	752 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	PTH	P01270	115 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	IFNA1	P01562	189 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ISG15	P05161	165 aa		4.8	□□□□□ -1.64

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