RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 NPBWR2P48146 333 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 SNU13P55769 128 aaKnown RBP10.84□□□□□ -0.67
VPS28-211ENST00000530790 LGALS4P56470 323 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 PDZK1IP1Q13113 114 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 GRK1Q15835 563 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 LRRC75BQ2VPJ9 315 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 KLHL22Q53GT1 634 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 SPIN3Q5JUX0 258 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 C11orf42Q8N5U0 333 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 ZSCAN4Q8NAM6 433 aaPredicted RBP10.84□□□□□ -0.67
VPS28-211ENST00000530790 OR52I1Q8NGK6 324 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 OR5AK2Q8NH90 309 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 LINC01006Q8NI28 216 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 HAVCR2Q8TDQ0 301 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 TSEN15Q8WW01 171 aaKnown RBP10.84□□□□□ -0.67
VPS28-211ENST00000530790 C17orf50Q8WW18 174 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 APH1BQ8WW43 257 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 RFT1Q96AA3 541 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 SNX22Q96L94 193 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 ZNF714Q96N38 554 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 PCDHGB5Q9Y5G0 923 aa10.84□□□□□ -0.67
VPS28-211ENST00000530790 hADV38S2A0JD32 116 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 TMEM82A0PJX8 343 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 MEX3AA1L020 520 aaKnown RBP10.83□□□□□ -0.68
VPS28-211ENST00000530790 C17orf98A8MV24 154 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 ZFPL1O95159 310 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 MT-ND2P03891 347 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 HCKP08631 526 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 PEX2P28328 305 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 GBX2P52951 348 aaPredicted RBP10.83□□□□□ -0.68
VPS28-211ENST00000530790 DLX6P56179 175 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 MEF2CQ06413 473 aaPredicted RBP10.83□□□□□ -0.68
VPS28-211ENST00000530790 ZNF146Q15072 292 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 Q6ZSV7 163 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 OR5D18Q8NGL1 313 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 OR13D1Q8NGV5 346 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 PPP1R35Q8TAP8 253 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 SPACA5Q96QH8 159 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 SSX3Q99909 188 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 CHST6Q9GZX3 395 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 PPA2Q9H2U2 334 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 ZCCHC4Q9H5U6 513 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 SEBOXQ9HB31 216 aaPredicted RBP10.83□□□□□ -0.68
VPS28-211ENST00000530790 EXOSC4Q9NPD3 245 aaKnown RBP10.83□□□□□ -0.68
VPS28-211ENST00000530790 MRPS18AQ9NVS2 196 aaKnown RBP10.83□□□□□ -0.68
VPS28-211ENST00000530790 DHDHQ9UQ10 334 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 MGAM2Q2M2H8 2515 aa10.83□□□□□ -0.68
VPS28-211ENST00000530790 MGST3O14880 152 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 SULT1B1O43704 296 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 KDM4BO94953 1096 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 ARG1P05089 322 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 CALCBP10092 127 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 DUSP1P28562 367 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 SRSF4Q08170 494 aaKnown RBP10.82□□□□□ -0.68
VPS28-211ENST00000530790 AANATQ16613 207 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 LPCAT4Q643R3 524 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 TREML4Q6UXN2 200 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 TCF23Q7RTU1 214 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 SERPINA12Q8IW75 414 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 OR5D14Q8NGL3 314 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 FOXRED1Q96CU9 486 aaPredicted RBP10.82□□□□□ -0.68
VPS28-211ENST00000530790 CPNE2Q96FN4 548 aaPredicted RBP10.82□□□□□ -0.68
VPS28-211ENST00000530790 AJUBAQ96IF1 538 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 CITED1Q99966 193 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 PDCD1LG2Q9BQ51 273 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 ZNF649Q9BS31 505 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 JAM3Q9BX67 310 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 C16orf95Q9H693 158 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 HMG20AQ9NP66 347 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 LINC00312Q9Y6C7 94 aa10.82□□□□□ -0.68
VPS28-211ENST00000530790 IGKV1-12A0A0C4DH73 117 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 IRGMA1A4Y4 181 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 E9PI62 339 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 SIRPB1O00241 398 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 SH2D1BO14796 132 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 PSPNO60542 156 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 TSPAN9O75954 239 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 CLPXO76031 633 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 IGKV1D-12P01611 117 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 IGHV1-8P0DP01 117 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 OR3A1P47881 315 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 PROK1P58294 105 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 LY6EQ16553 131 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 SMN1Q16637 294 aaKnown RBP10.81□□□□□ -0.68
VPS28-211ENST00000530790 ZNF691Q5VV52 312 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 LHFPL4Q7Z7J7 247 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 TRAPPC6BQ86SZ2 158 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 SAXO1Q8IYX7 474 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 PARP16Q8N5Y8 322 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 TPRX1Q8N7U7 411 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 OR4S1Q8NGB4 309 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 OR52N4Q8NGI2 321 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 CYGBQ8WWM9 190 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 MEGF9Q9H1U4 602 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 RHOFQ9HBH0 211 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 RAB18Q9NP72 206 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 FGF20Q9NP95 211 aaPredicted RBP10.81□□□□□ -0.68
VPS28-211ENST00000530790 C8orf4Q9NR00 106 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 GSTK1Q9Y2Q3 226 aa10.81□□□□□ -0.68
VPS28-211ENST00000530790 TBL2Q9Y4P3 447 aaKnown RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms