RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 GABRA5P31644 462 aa13.47□□□□□ -0.25
USP40-212ENST00000473191 RBP2P50120 134 aa13.47□□□□□ -0.25
USP40-212ENST00000473191 EFNB2P52799 333 aa13.47□□□□□ -0.25
USP40-212ENST00000473191 MTCP1P56278 107 aa13.47□□□□□ -0.25
USP40-212ENST00000473191 CNN3Q15417 329 aaKnown RBP13.47□□□□□ -0.25
USP40-212ENST00000473191 SLC25A30Q5SVS4 291 aa13.47□□□□□ -0.25
USP40-212ENST00000473191 TMEM244Q5VVB8 128 aa13.47□□□□□ -0.25
USP40-212ENST00000473191 FDX2Q6P4F2 183 aa13.47□□□□□ -0.25
USP40-212ENST00000473191 GDPD3Q7L5L3 318 aa13.47□□□□□ -0.25
USP40-212ENST00000473191 TMEM219Q86XT9 240 aa13.47□□□□□ -0.25
USP40-212ENST00000473191 SNX22Q96L94 193 aa13.47□□□□□ -0.25
USP40-212ENST00000473191 PRKDCP78527 4128 aaKnown RBP13.46□□□□□ -0.25
USP40-212ENST00000473191 TRBV2A0A0J9YWF9 115 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 SERPINA3P01011 423 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 HTR1AP08908 422 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 DBTP11182 482 aaKnown RBP13.46□□□□□ -0.25
USP40-212ENST00000473191 PRKACAP17612 351 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 GABRR1P24046 479 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 OR3A1P47881 315 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 ATP1B3P54709 279 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 LGALS4P56470 323 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 GABPB1Q06547 395 aaPredicted RBP13.46□□□□□ -0.25
USP40-212ENST00000473191 PDZK1IP1Q13113 114 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 GRK1Q15835 563 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 SSX2Q16385 188 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 ZNF626Q68DY1 528 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 Q6ZS46 218 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 FAM58AQ8N1B3 248 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 DNAAF1Q8NEP3 725 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 PP6455Q8WZ26 134 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 C10orf35Q96D05 121 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 ZNF714Q96N38 554 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 NKX3-1Q99801 234 aaPredicted RBP13.46□□□□□ -0.25
USP40-212ENST00000473191 WNK1Q9H4A3 2382 aa13.46□□□□□ -0.25
USP40-212ENST00000473191 SIRPB1O00241 398 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 ZNF20P17024 532 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 GDNFP39905 211 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 KIR2DS4P43632 304 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 ACTA2P62736 377 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 ACTG2P63267 376 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 ACTC1P68032 377 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 ACTA1P68133 377 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 ALKBH1Q13686 389 aaKnown RBP13.45□□□□□ -0.26
USP40-212ENST00000473191 FAM189A2Q15884 450 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 FBLN7Q53RD9 439 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 UTF1Q5T230 341 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 UTS2BQ765I0 119 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 LYG1Q8N1E2 194 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 ACBD7Q8N6N7 88 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 KLHDC1Q8N7A1 406 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 CCDC54Q8NEL0 328 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 OR11H6Q8NGC7 330 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 OR13C3Q8NGS6 347 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 OR13C9Q8NGT0 318 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 APH1BQ8WW43 257 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 OPALINQ96PE5 141 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 ALG8Q9BVK2 526 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 ZNF702PQ9H963 129 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 GSTK1Q9Y2Q3 226 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 GMPPBQ9Y5P6 360 aa13.45□□□□□ -0.26
USP40-212ENST00000473191 TET2Q6N021 2002 aaPredicted RBP13.44□□□□□ -0.26
USP40-212ENST00000473191 hCG_1809904A0A1W2PP81 198 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 A0A1W2PPE2 198 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 A0A1W2PR64 198 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 A0A1W2PRV1 198 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 FAM172BPA6NC97 362 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 VGLL3A8MV65 326 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 OR2H2O95918 312 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 DYNC1I2Q13409 638 aaKnown RBP13.44□□□□□ -0.26
USP40-212ENST00000473191 ZNF146Q15072 292 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 AANATQ16613 207 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 MEDAGQ5VYS4 303 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 LHFPL2Q6ZUX7 228 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 KCTD20Q7Z5Y7 419 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 OR13D1Q8NGV5 346 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 HMG20AQ9NP66 347 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 TCF19Q9Y242 345 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 HILPDAQ9Y5L2 63 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 ORC6Q9Y5N6 252 aa13.44□□□□□ -0.26
USP40-212ENST00000473191 IGHV2-26A0A0B4J1V2 119 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 A6NDX4 124 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 RRP9O43818 475 aaKnown RBP13.43□□□□□ -0.26
USP40-212ENST00000473191 VSIG10L2P0DP72 767 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 PEX2P28328 305 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 CCR9P51686 369 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 GALEQ14376 348 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 HERPUD1Q15011 391 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 PRAMEF5Q5TYX0 476 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 ZNF676Q8N7Q3 588 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 OR4C13Q8NGP0 309 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 RHOXF1Q8NHV9 184 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 PDCD1LG2Q9BQ51 273 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 SERTAD4Q9NUC0 356 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 ING3Q9NXR8 418 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 HHLA2Q9UM44 414 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 TBL2Q9Y4P3 447 aaKnown RBP13.43□□□□□ -0.26
USP40-212ENST00000473191 LINC00312Q9Y6C7 94 aa13.43□□□□□ -0.26
USP40-212ENST00000473191 hADV38S2A0JD32 116 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 KDM4BO94953 1096 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 ZFPL1O95159 310 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms