RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 SRD5A3Q9H8P0 318 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 ERRFI1Q9UJM3 462 aaPredicted RBP11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 HDGFL3Q9Y3E1 203 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 LMO7DNF2Z398 122 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 COX6B1P14854 86 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 SPCS3P61009 180 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 PPP1CBP62140 327 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 D2HGDHQ8N465 521 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 ZNF561Q8N587 486 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 ZNF441Q8N8Z8 693 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 GPX8Q8TED1 209 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 TM4SF19Q96DZ7 209 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 NAA60Q9H7X0 242 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 SS18L1O75177 396 aaPredicted RBP11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 PNLIPRP2P54317 469 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 GNG3P63215 75 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 DUSP8Q13202 625 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 TTC32Q5I0X7 151 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 ALX4Q9H161 411 aaPredicted RBP11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 ZMIZ1Q9ULJ6 1067 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 C4BP0C0L5 1744 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 MEOX2P50222 304 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 ALKAL1Q6UXT8 129 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 MRGPRDQ8TDS7 321 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 SLC25A46Q96AG3 418 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 GSX1Q9H4S2 264 aaPredicted RBP11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 EDA2RQ9HAV5 297 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 CD3EP07766 207 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 FUT6P51993 359 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 SLC37A1P57057 533 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 GUCA2AQ02747 115 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 EGR3Q06889 387 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 RNF212Q495C1 297 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 SLC25A30Q5SVS4 291 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 ABI3BPQ7Z7G0 1075 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 OR1F12Q8NHA8 337 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 RAXQ9Y2V3 346 aa11.85□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 ROM1Q03395 351 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 MBD3L1Q8WWY6 194 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 TMEM37Q8WXS4 190 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 GPR61Q9BZJ8 451 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 IGHV3-21A0A0B4J1V1 117 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 SAXO2Q658L1 398 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 RTN4RL1Q86UN2 441 aaPredicted RBP11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 OR13G1Q8NGZ3 307 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 NAT8BQ9UHF3 227 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 TRAPPC1Q9Y5R8 145 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 CIRBPQ14011 172 aaKnown RBP11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 ECSCRQ19T08 205 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 DYRK2Q92630 601 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 RAB1CQ92928 201 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 FLYWCH2Q96CP2 140 aaKnown RBP11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 DERL3Q96Q80 235 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 OR2D2Q9H210 308 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 XKR7Q5GH72 579 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 ZNF343Q6P1L6 599 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 SPNS2Q8IVW8 549 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 OR10A7Q8NGE5 316 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 DYNC2LI1Q8TCX1 351 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 VSIG4Q9Y279 399 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 MT-CO3P00414 261 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 PPP1R1CQ8WVI7 109 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 EXTL1Q92935 676 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 DMRTA2Q96SC8 542 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 KCNE3Q9Y6H6 103 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 PCMT1P22061 227 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 RPS4XP62701 263 aaKnown RBP11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 CLEC9AQ6UXN8 241 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 OR8I2Q8N0Y5 310 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 DHHO43323 396 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 MED30Q96HR3 178 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 FAM210BQ96KR6 192 aa11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 SIRT3Q9NTG7 399 aaPredicted RBP11.84□□□□□ -0.51
NPHP3-ACAD11-201ENST00000471702 TRAV39A0A0B4J263 110 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 BEND2Q8NDZ0 799 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 OR5V1Q9UGF6 321 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 THADAQ6YHU6 1953 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 HMGA1P17096 107 aaKnown RBP11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 HIST1H3AP68431 136 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 C21orf62-AS1Q17RA5 79 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 NOXO1Q8NFA2 376 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 CMC2Q9NRP2 79 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 IL17BQ9UHF5 180 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 GSTZ1O43708 216 aaPredicted RBP11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 SLC25A17O43808 307 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 COX6CP09669 75 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 FPR2P25090 351 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 DCTDP32321 178 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 DDB2Q92466 427 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 RND1Q92730 232 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 KTI12Q96EK9 354 aaPredicted RBP11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 KCNK15Q9H427 330 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 ACER3Q9NUN7 267 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 NCKAP5O14513 1909 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 RER1O15258 196 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 FZD6O60353 706 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 TSPAN13O95857 204 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 TMEM196Q5HYL7 178 aa11.83□□□□□ -0.52
NPHP3-ACAD11-201ENST00000471702 ZNF793Q6ZN11 406 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms