RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 Q8IYB0 196 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 FAM58AQ8N1B3 248 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 OR5AK2Q8NH90 309 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 TSEN15Q8WW01 171 aaKnown RBP13.3□□□□□ -0.28
LSM1-201ENST00000311351 RGP1Q92546 391 aaPredicted RBP13.3□□□□□ -0.28
LSM1-201ENST00000311351 DYRK2Q92630 601 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 MYCBPQ99417 103 aaPredicted RBP13.3□□□□□ -0.28
LSM1-201ENST00000311351 JAM3Q9BX67 310 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 CHST6Q9GZX3 395 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 COMMD4Q9H0A8 199 aa13.3□□□□□ -0.28
LSM1-201ENST00000311351 CYB5AP00167 134 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 PAHP00439 452 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 MT-ND2P03891 347 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 BMXP51813 675 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 DLX6P56179 175 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 ACSM1Q08AH1 577 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 MRPL28Q13084 256 aaKnown RBP13.29□□□□□ -0.28
LSM1-201ENST00000311351 SHISA2Q6UWI4 295 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 C17orf107Q6ZR85 190 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 GDPD3Q7L5L3 318 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 OR8H2Q8N162 312 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 TPRX1Q8N7U7 411 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 OR52N4Q8NGI2 321 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 AJUBAQ96IF1 538 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 VCXQ9H320 206 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 DPAGT1Q9H3H5 408 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 ZCCHC4Q9H5U6 513 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 DCLRE1BQ9H816 532 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 NEK6Q9HC98 313 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 DHDHQ9UQ10 334 aa13.29□□□□□ -0.28
LSM1-201ENST00000311351 SF3B6Q9Y3B4 125 aaKnown RBP13.29□□□□□ -0.28
LSM1-201ENST00000311351 A0A1W2PPH5 198 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 SIRPB1O00241 398 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 SULT1B1O43704 296 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 PSPNO60542 156 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 NDUFA7O95182 113 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 HCKP08631 526 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 GABRR1P24046 479 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 SOX2P48431 317 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 ADARB1P78563 741 aaKnown RBP13.28□□□□□ -0.28
LSM1-201ENST00000311351 IL18R1Q13478 541 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 TTC23Q5W5X9 447 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 ASPHD2Q6ICH7 369 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 DHRSXQ8N5I4 330 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 OR4F5Q8NH21 305 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 SNX22Q96L94 193 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 HMG20AQ9NP66 347 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 VPREB3Q9UKI3 123 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 GSTK1Q9Y2Q3 226 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 PKD1L1Q8TDX9 2849 aa13.28□□□□□ -0.28
LSM1-201ENST00000311351 KIAA2026Q5HYC2 2103 aa13.27□□□□□ -0.28
LSM1-201ENST00000311351 BTBD17A6NE02 478 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 ERICH4A6NGS2 130 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 C17orf98A8MV24 154 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 KDM4BO94953 1096 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 DCKP27707 260 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 OR3A1P47881 315 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 SRSF4Q08170 494 aaKnown RBP13.27□□□□□ -0.29
LSM1-201ENST00000311351 ZNF146Q15072 292 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 CDK5R1Q15078 307 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 GRK1Q15835 563 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 MIDNQ504T8 468 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 PARP16Q8N5Y8 322 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 SETD9Q8NE22 299 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 OR4S1Q8NGB4 309 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 OR51A2Q8NGJ7 313 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 RPS4Y2Q8TD47 263 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 WFDC12Q8WWY7 111 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 NKX3-1Q99801 234 aaPredicted RBP13.27□□□□□ -0.29
LSM1-201ENST00000311351 HEXA-AS1Q9H8Q6 139 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 TAS2R4Q9NYW5 299 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 CLEC2DQ9UHP7 191 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 DIMT1Q9UNQ2 313 aaKnown RBP13.27□□□□□ -0.29
LSM1-201ENST00000311351 MMP24Q9Y5R2 645 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 SIRT4Q9Y6E7 314 aaPredicted RBP13.27□□□□□ -0.29
LSM1-201ENST00000311351 TRRAPQ9Y4A5 3859 aa13.27□□□□□ -0.29
LSM1-201ENST00000311351 hCG_1809904A0A1W2PP81 198 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 A0A1W2PPE2 198 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 A0A1W2PR64 198 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 A0A1W2PRV1 198 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 POM121CA8CG34 1229 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 H3BUX3 64 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 LALBAP00709 142 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 GNAO1P09471 354 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 ZNF728P0DKX0 622 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 ZP1P60852 638 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 RPL15P61313 204 aaKnown RBP13.26□□□□□ -0.29
LSM1-201ENST00000311351 SPIN3Q5JUX0 258 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 OGFRL1Q5TC84 451 aaPredicted RBP13.26□□□□□ -0.29
LSM1-201ENST00000311351 SERPINA12Q8IW75 414 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 BEND2Q8NDZ0 799 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 SGMS2Q8NHU3 365 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 BEX1Q9HBH7 125 aa13.26□□□□□ -0.29
LSM1-201ENST00000311351 EXOSC4Q9NPD3 245 aaKnown RBP13.26□□□□□ -0.29
LSM1-201ENST00000311351 IRGMA1A4Y4 181 aa13.25□□□□□ -0.29
LSM1-201ENST00000311351 CASQ2O14958 399 aaPredicted RBP13.25□□□□□ -0.29
LSM1-201ENST00000311351 OR2H2O95918 312 aa13.25□□□□□ -0.29
LSM1-201ENST00000311351 TMEM225BP0DP42 221 aa13.25□□□□□ -0.29
LSM1-201ENST00000311351 CAPGP40121 348 aa13.25□□□□□ -0.29
LSM1-201ENST00000311351 KISS1Q15726 138 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms