RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 CNN1P51911 297 aaKnown RBP12.88□□□□□ -0.35
PTPRA-201ENST00000216877 TAS2R46P59540 309 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 RAB35Q15286 201 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 PCK2Q16822 640 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 C1orf185Q5T7R7 199 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 SLC25A26Q70HW3 274 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 HDHD3Q9BSH5 251 aaPredicted RBP12.88□□□□□ -0.35
PTPRA-201ENST00000216877 TMEM9BQ9NQ34 198 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 B4DEV8 164 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 HNRNPA3P51991 378 aaKnown RBP12.88□□□□□ -0.35
PTPRA-201ENST00000216877 GRINAQ7Z429 371 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 ABHD12BQ7Z5M8 362 aaPredicted RBP12.88□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF440Q8IYI8 595 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 DAZLQ92904 295 aaKnown RBP12.88□□□□□ -0.35
PTPRA-201ENST00000216877 HSPB9Q9BQS6 159 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 SLC5A6Q9Y289 635 aa12.88□□□□□ -0.35
PTPRA-201ENST00000216877 ITGB1BP1O14713 200 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 CTLA4P16410 223 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 GABREP78334 506 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 C1orf140Q5VVS0 124 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 FBXW9Q5XUX1 488 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 RSPRY1Q96DX4 576 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 TRAPPC1Q9Y5R8 145 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 ATG2AQ2TAZ0 1938 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 ARHGAP21Q5T5U3 1957 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 GVINP1Q7Z2Y8 2422 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 CABIN1Q9Y6J0 2220 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 OR51E1Q8TCB6 317 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 PRSS50Q9UI38 385 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 SELENOKQ9Y6D0 94 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 KNTC1P50748 2209 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 CHD7Q9P2D1 2997 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 DUSP1P28562 367 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 RRADP55042 308 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 OR51I2Q9H344 312 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 PLEKHJ1Q9NW61 149 aa12.87□□□□□ -0.35
PTPRA-201ENST00000216877 DYNLT3P51808 116 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 SUCLG1P53597 346 aaKnown RBP12.86□□□□□ -0.35
PTPRA-201ENST00000216877 ACKR1Q16570 336 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 CBLN3Q6UW01 205 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 OR2T10Q8NGZ9 312 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 APH1AQ96BI3 265 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 LPAR5Q9H1C0 372 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 SMDT1Q9H4I9 107 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 TCF20Q9UGU0 1960 aaKnown RBP12.86□□□□□ -0.35
PTPRA-201ENST00000216877 K7EQS6 105 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 IFNA5P01569 189 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 IGKV1D-16P01601 117 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 BMP5P22003 454 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 MGAT2Q10469 447 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 TCTN1Q2MV58 587 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 BSXQ3C1V8 233 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 LDLRAD2Q5SZI1 272 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 BRICD5Q6PL45 260 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 CHRDL2Q6WN34 429 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 Q6ZNB5 142 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 BAGE3Q86Y29 109 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 BAGE2Q86Y30 109 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF321PQ8N8H1 164 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 CLDND2Q8NHS1 167 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 KCNG3Q8TAE7 436 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 CMTM2Q8TAZ6 248 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF596Q8TC21 504 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 OR10A2Q9H208 303 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 CALHM2Q9HA72 323 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 P4HTMQ9NXG6 502 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 HEBP2Q9Y5Z4 205 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 MSTNO14793 375 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF217O75362 1048 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 OR2J2O76002 312 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 UMODP07911 640 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF728P0DKX0 622 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 NKX2-1P43699 371 aaPredicted RBP12.86□□□□□ -0.35
PTPRA-201ENST00000216877 CSNK1A1P48729 337 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 FAM78BQ5VT40 261 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 TMEM215Q68D42 235 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 OR14C36Q8NHC7 312 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 SCGB1C1Q8TD33 95 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 NKX2-4Q9H2Z4 354 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 MMP25Q9NPA2 562 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 KLHL13Q9P2N7 655 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 UBE2J1Q9Y385 318 aaPredicted RBP12.86□□□□□ -0.35
PTPRA-201ENST00000216877 MTCH2Q9Y6C9 303 aa12.86□□□□□ -0.35
PTPRA-201ENST00000216877 TRBV24-1A0A075B6N3 115 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 BPNT1O95861 308 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 IL6RP08887 468 aaPredicted RBP12.85□□□□□ -0.35
PTPRA-201ENST00000216877 GZMHP20718 246 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 PNRC1Q12796 327 aaPredicted RBP12.85□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF154Q13106 437 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 VAX1Q5SQQ9 334 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 CATSPERDQ86XM0 798 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 STPG4Q8N801 248 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 TMEM52Q8NDY8 209 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 RBMXL1Q96E39 390 aaKnown RBP12.85□□□□□ -0.35
PTPRA-201ENST00000216877 GPHA2Q96T91 129 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 CUTCQ9NTM9 273 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 DAPP1Q9UN19 280 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 GPR34Q9UPC5 381 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 TRANK1O15050 2925 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 KIAA2026Q5HYC2 2103 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms