RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZNF773Q6PK81 442 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 BRD3OSQ6XYD6 125 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 OR13C3Q8NGS6 347 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 GCDHQ92947 438 aaPredicted RBP15.87■□□□□ 0.13
CLN3-260ENST00000637578 ADAT3Q96EY9 351 aaPredicted RBP15.87■□□□□ 0.13
CLN3-260ENST00000637578 DCTN5Q9BTE1 182 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 ACOT13Q9NPJ3 140 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 ZNF281Q9Y2X9 895 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 NOS1APO75052 506 aaPredicted RBP15.86■□□□□ 0.13
CLN3-260ENST00000637578 PSG2P11465 335 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 MPZP25189 248 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 CAV3P56539 151 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 ARF6P62330 175 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 IL13RA1P78552 427 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 IKZF1Q13422 519 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 PDCD1Q15116 288 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 C12orf54Q6X4T0 127 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 ZNF573Q86YE8 665 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 SVOPQ8N4V2 548 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 POC1AQ8NBT0 407 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 OR13C5Q8NGS8 318 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 TSEN15Q8WW01 171 aaKnown RBP15.86■□□□□ 0.13
CLN3-260ENST00000637578 TMIGD2Q96BF3 282 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 GPR173Q9NS66 373 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 TENM1Q9UKZ4 2725 aa15.86■□□□□ 0.13
CLN3-260ENST00000637578 NKX6-3A6NJ46 265 aa15.85■□□□□ 0.13
CLN3-260ENST00000637578 J3QT63 122 aa15.85■□□□□ 0.13
CLN3-260ENST00000637578 TNFAIP8O95379 198 aa15.85■□□□□ 0.13
CLN3-260ENST00000637578 TFF1P04155 84 aa15.85■□□□□ 0.13
CLN3-260ENST00000637578 RNASE1P07998 156 aaKnown RBP15.85■□□□□ 0.13
CLN3-260ENST00000637578 RPSAP08865 295 aaKnown RBP15.85■□□□□ 0.13
CLN3-260ENST00000637578 HSMCR30P0CW71 290 aa15.85■□□□□ 0.13
CLN3-260ENST00000637578 PGA5P0DJD9 388 aa15.85■□□□□ 0.13
CLN3-260ENST00000637578 SLC9A3R2Q15599 337 aa15.85■□□□□ 0.13
CLN3-260ENST00000637578 ZNF367Q7RTV3 350 aa15.85■□□□□ 0.13
CLN3-260ENST00000637578 GPR148Q8TDV2 347 aa15.85■□□□□ 0.13
CLN3-260ENST00000637578 FGGYQ96C11 551 aa15.85■□□□□ 0.13
CLN3-260ENST00000637578 ANKRD61A6NGH8 418 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 ZNF20P17024 532 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 HAAOP46952 286 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 DEFB112Q30KQ8 113 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 ACP7Q6ZNF0 438 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 KIR3DL3Q8N743 410 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 C10orf35Q96D05 121 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 SDSLQ96GA7 329 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 OPALINQ96PE5 141 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 DUX5Q96PT3 197 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 MGLLQ99685 303 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 CHST5Q9GZS9 411 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 SLC25A10Q9UBX3 287 aaPredicted RBP15.84■□□□□ 0.13
CLN3-260ENST00000637578 DHDHQ9UQ10 334 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 MAB21L2Q9Y586 359 aa15.84■□□□□ 0.13
CLN3-260ENST00000637578 IGHV1-69DA0A0B4J2H0 117 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 MDFIC2A0A1B0GVS7 189 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 SYNGR1O43759 233 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 IGHV1-69P01742 117 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 CD1AP06126 327 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 HKR1P10072 659 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 CFPP27918 469 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 SOX2P48431 317 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 RPS11P62280 158 aaKnown RBP eCLIP15.83■□□□□ 0.13
CLN3-260ENST00000637578 MLLT11Q13015 90 aaPredicted RBP15.83■□□□□ 0.13
CLN3-260ENST00000637578 YIF1BQ5BJH7 314 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 RUSC1-AS1Q66K80 236 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 METAP1DQ6UB28 335 aaPredicted RBP15.83■□□□□ 0.13
CLN3-260ENST00000637578 C1orf122Q6ZSJ8 110 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 UFD1Q92890 307 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 SLC25A28Q96A46 364 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 NRIP2Q9BQI9 281 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 HES4Q9HCC6 221 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 ISYNA1Q9NPH2 558 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 NOX4Q9NPH5 578 aa15.83■□□□□ 0.13
CLN3-260ENST00000637578 ERVK11-1P61568 191 aa15.83■□□□□ 0.12
CLN3-260ENST00000637578 UBE2V2Q15819 145 aa15.83■□□□□ 0.12
CLN3-260ENST00000637578 LIPKQ5VXJ0 399 aa15.83■□□□□ 0.12
CLN3-260ENST00000637578 Q6YL49 198 aa15.83■□□□□ 0.12
CLN3-260ENST00000637578 ZNRF1Q8ND25 227 aa15.83■□□□□ 0.12
CLN3-260ENST00000637578 PP6455Q8WZ26 134 aa15.83■□□□□ 0.12
CLN3-260ENST00000637578 PKIBQ9C010 78 aa15.83■□□□□ 0.12
CLN3-260ENST00000637578 ZNF696Q9H7X3 374 aa15.83■□□□□ 0.12
CLN3-260ENST00000637578 POLDIP2Q9Y2S7 368 aa15.83■□□□□ 0.12
CLN3-260ENST00000637578 TRBV5-5A0A0J9YX44 114 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 OCM2P0CE71 109 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 GABRA2P47869 451 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 IL24Q13007 206 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 TPBGQ13641 420 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 SMIM21Q3B7S5 101 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 UBE2UQ5VVX9 321 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 VMO1Q7Z5L0 202 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 CALHM1Q8IU99 346 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 Q8N7P7 452 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 TSPAN14Q8NG11 270 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 LHX4Q969G2 390 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 TMEM106AQ96A25 262 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 ZNF488Q96MN9 340 aa15.82■□□□□ 0.12
CLN3-260ENST00000637578 RFPL4AA6NLU0 287 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 RFPL4AL1F8VTS6 287 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 GATBO75879 557 aaKnown RBP15.81■□□□□ 0.12
CLN3-260ENST00000637578 GPR50Q13585 617 aa15.81■□□□□ 0.12
CLN3-260ENST00000637578 UTS2BQ765I0 119 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms