RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 PLEKHA1Q9HB21 404 aa14.4□□□□□ -0.1
HDDC3-205ENST00000559898 RBFOX1Q9NWB1 397 aaKnown RBP14.4□□□□□ -0.1
HDDC3-205ENST00000559898 USE1Q9NZ43 259 aa14.4□□□□□ -0.1
HDDC3-205ENST00000559898 ENOPH1Q9UHY7 261 aa14.4□□□□□ -0.1
HDDC3-205ENST00000559898 POLDIP2Q9Y2S7 368 aa14.4□□□□□ -0.1
HDDC3-205ENST00000559898 K7N7A8 449 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 CHST1O43916 411 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 TSPAN15O95858 294 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 GABRB1P18505 474 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 BCL3P20749 454 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 RAB13P51153 203 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 ACSM1Q08AH1 577 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 BLMHQ13867 455 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 FGGYQ96C11 551 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 LGALS12Q96DT0 336 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 CEP19Q96LK0 163 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 CHST6Q9GZX3 395 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 C16orf95Q9H693 158 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 SLC7A11Q9UPY5 501 aa14.39□□□□□ -0.11
HDDC3-205ENST00000559898 SF3B6Q9Y3B4 125 aaKnown RBP14.39□□□□□ -0.11
HDDC3-205ENST00000559898 IGKV1-12A0A0C4DH73 117 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 TSPAN9O75954 239 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 IGKV1D-12P01611 117 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 ALDH3A2P51648 485 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 RPL15P61313 204 aaKnown RBP14.38□□□□□ -0.11
HDDC3-205ENST00000559898 BAIAP2L2Q6UXY1 529 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 EGFL6Q8IUX8 553 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 OR5D13Q8NGL4 314 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 PELI1Q96FA3 418 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 MEGF9Q9H1U4 602 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 ISG20L2Q9H9L3 353 aaKnown RBP14.38□□□□□ -0.11
HDDC3-205ENST00000559898 AMBNQ9NP70 447 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 IMPAD1Q9NX62 359 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 MYRFQ9Y2G1 1151 aa14.38□□□□□ -0.11
HDDC3-205ENST00000559898 CAB39Q9Y376 341 aaPredicted RBP14.38□□□□□ -0.11
HDDC3-205ENST00000559898 DAPL1A0PJW8 107 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 C17orf98A8MV24 154 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 J3QLW9 94 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 PSPNO60542 156 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 MMP23AO75900 390 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 ZNF19P17023 458 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 POU3F4P49335 361 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 FUT6P51993 359 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 EDDM3BP56851 147 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 SNRPGP62308 76 aaKnown RBP14.37□□□□□ -0.11
HDDC3-205ENST00000559898 DEFA6Q01524 100 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 TMED1Q13445 227 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 EDDM3AQ14507 147 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 OCLNQ16625 522 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 CCBE1Q6UXH8 406 aaPredicted RBP14.37□□□□□ -0.11
HDDC3-205ENST00000559898 LHFPL3Q86UP9 236 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 ENTHD1Q8IYW4 607 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 EMG1Q92979 244 aaKnown RBP14.37□□□□□ -0.11
HDDC3-205ENST00000559898 RFKQ969G6 155 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 BORCS8Q96FH0 119 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 C4orf36Q96KX1 117 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 ZNF649Q9BS31 505 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 ADI1Q9BV57 179 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 FOXJ3Q9UPW0 622 aa14.37□□□□□ -0.11
HDDC3-205ENST00000559898 EXOGQ9Y2C4 368 aaKnown RBP14.37□□□□□ -0.11
HDDC3-205ENST00000559898 E9PI62 339 aa14.36□□□□□ -0.11
HDDC3-205ENST00000559898 SLC16A6O15403 523 aa14.36□□□□□ -0.11
HDDC3-205ENST00000559898 ATF1P18846 271 aa14.36□□□□□ -0.11
HDDC3-205ENST00000559898 AZGP1P25311 298 aaKnown RBP14.36□□□□□ -0.11
HDDC3-205ENST00000559898 ZNF91Q05481 1191 aa14.36□□□□□ -0.11
HDDC3-205ENST00000559898 MIDNQ504T8 468 aa14.36□□□□□ -0.11
HDDC3-205ENST00000559898 SLC25A30Q5SVS4 291 aa14.36□□□□□ -0.11
HDDC3-205ENST00000559898 FAM220AQ7Z4H9 259 aa14.36□□□□□ -0.11
HDDC3-205ENST00000559898 OR4S1Q8NGB4 309 aa14.36□□□□□ -0.11
HDDC3-205ENST00000559898 BTBD17A6NE02 478 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 OR4C45A6NMZ5 311 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 GATBO75879 557 aaKnown RBP14.35□□□□□ -0.11
HDDC3-205ENST00000559898 HAND1O96004 215 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 CHRM2P08172 466 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 UBCP0CG48 685 aaKnown RBP14.35□□□□□ -0.11
HDDC3-205ENST00000559898 TGFBR2P37173 567 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 HABP2Q14520 560 aaPredicted RBP14.35□□□□□ -0.11
HDDC3-205ENST00000559898 LRRC75BQ2VPJ9 315 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 FDX2Q6P4F2 183 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 OR5D18Q8NGL1 313 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 OR5R1Q8NH85 324 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 TRUB1Q8WWH5 349 aaKnown RBP14.35□□□□□ -0.11
HDDC3-205ENST00000559898 NKX3-1Q99801 234 aaPredicted RBP14.35□□□□□ -0.11
HDDC3-205ENST00000559898 FAM234AQ9H0X4 552 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 TCF7L1Q9HCS4 588 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.35□□□□□ -0.11
HDDC3-205ENST00000559898 GMPPBQ9Y5P6 360 aa14.35□□□□□ -0.11
HDDC3-205ENST00000559898 TET2Q6N021 2002 aaPredicted RBP14.34□□□□□ -0.11
HDDC3-205ENST00000559898 FAM90A8PA6NJQ4 464 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 ODF3BA8MYP8 253 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 HTR1AP08908 422 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 DBTP11182 482 aaKnown RBP14.34□□□□□ -0.11
HDDC3-205ENST00000559898 MTCP1P56278 107 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 FBLN7Q53RD9 439 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 UTF1Q5T230 341 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 CCDC121Q6ZUS5 278 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 OR8H2Q8N162 312 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 C11orf44Q8N8P7 122 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 OR13C9Q8NGT0 318 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 APH1BQ8WW43 257 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms