RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 ZP1P60852 638 aa11.49□□□□□ -0.57
PTCH1-213ENST00000546820 IL13RA1P78552 427 aa11.49□□□□□ -0.57
PTCH1-213ENST00000546820 TIMM50Q3ZCQ8 353 aa11.49□□□□□ -0.57
PTCH1-213ENST00000546820 LRRC10Q5BKY1 277 aa11.49□□□□□ -0.57
PTCH1-213ENST00000546820 CD276Q5ZPR3 534 aa11.49□□□□□ -0.57
PTCH1-213ENST00000546820 STUMQ69YW2 141 aa11.49□□□□□ -0.57
PTCH1-213ENST00000546820 ASCL4Q6XD76 172 aa11.49□□□□□ -0.57
PTCH1-213ENST00000546820 ANGPTL6Q8NI99 470 aa11.49□□□□□ -0.57
PTCH1-213ENST00000546820 MSI2Q96DH6 328 aaKnown RBP11.49□□□□□ -0.57
PTCH1-213ENST00000546820 SSBP3Q9BWW4 388 aaPredicted RBP11.49□□□□□ -0.57
PTCH1-213ENST00000546820 MRPS26Q9BYN8 205 aaKnown RBP11.49□□□□□ -0.57
PTCH1-213ENST00000546820 SEBOXQ9HB31 216 aaPredicted RBP11.49□□□□□ -0.57
PTCH1-213ENST00000546820 CR1P17927 2039 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 TRAV1-2A0A0B4J238 106 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 TRAV20A0A0B4J274 112 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 SH2D1BO14796 132 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 GPR37O15354 613 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 LY6G6DO95868 133 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 CHRM2P08172 466 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 PRKACAP17612 351 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 OR3A4PP47883 348 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 NPBWR2P48146 333 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 MTNR1BP49286 362 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 C11orf91Q3C1V1 193 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 SPIN3Q5JUX0 258 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 FAM166AQ6J272 317 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 GDPGP1Q6ZNW5 385 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 ZNF788Q6ZQV5 615 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 RNF144BQ7Z419 303 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 LRRTM1Q86UE6 522 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 GLCCI1Q86VQ1 547 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 BATF2Q8N1L9 274 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 ZNF561Q8N587 486 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 PPIL3Q9H2H8 161 aaKnown RBP11.48□□□□□ -0.57
PTCH1-213ENST00000546820 HMG20AQ9NP66 347 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 RBFOX1Q9NWB1 397 aaKnown RBP11.48□□□□□ -0.57
PTCH1-213ENST00000546820 GHRLQ9UBU3 117 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 OR14J1Q9UGF5 321 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 OR5V1Q9UGF6 321 aa11.48□□□□□ -0.57
PTCH1-213ENST00000546820 YLPM1P49750 1951 aaKnown RBP11.48□□□□□ -0.57
PTCH1-213ENST00000546820 FLNAP21333 2647 aaKnown RBP11.47□□□□□ -0.57
PTCH1-213ENST00000546820 IGKV1D-17A0A075B6S4 117 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 IGKV1-12A0A0C4DH73 117 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 F8VVB4 439 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 F8VWA3 439 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 DVL1O14640 695 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 SIGLEC5O15389 551 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 HTR3BO95264 441 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 ECDO95905 644 aaPredicted RBP11.47□□□□□ -0.57
PTCH1-213ENST00000546820 IGKV1D-12P01611 117 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 DVL1P1P54792 670 aaPredicted RBP11.47□□□□□ -0.57
PTCH1-213ENST00000546820 LCN2P80188 198 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 ZNF146Q15072 292 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 WDR25Q64LD2 544 aaPredicted RBP11.47□□□□□ -0.57
PTCH1-213ENST00000546820 ELP2Q6IA86 826 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 C22orf42Q6IC83 251 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 CRIP3Q6Q6R5 217 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 C1QL2Q7Z5L3 287 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 TMEM186Q96B77 213 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 SDSLQ96GA7 329 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 SMR3AQ99954 134 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 CNTD2Q9H8S5 307 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 LPAR2Q9HBW0 351 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 YAE1D1Q9NRH1 226 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 TXNL4BQ9NX01 149 aaKnown RBP11.47□□□□□ -0.57
PTCH1-213ENST00000546820 IL36GQ9NZH8 169 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 KCNS2Q9ULS6 477 aa11.47□□□□□ -0.57
PTCH1-213ENST00000546820 MRPS28Q9Y2Q9 187 aaKnown RBP11.47□□□□□ -0.57
PTCH1-213ENST00000546820 AKAP9Q99996 3911 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 MED13LQ71F56 2210 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 LOC105371242A0A075B767 164 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 PPIAL4CA0A0B4J2A2 164 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 A8MXK9 166 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 PHF1O43189 567 aaPredicted RBP11.46□□□□□ -0.57
PTCH1-213ENST00000546820 CDRT1O95170 752 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 SFTPBP07988 381 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 UBBP0CG47 229 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 ADRA2CP18825 462 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 GATA3P23771 443 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 CAPZA1P52907 286 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 FGF12P61328 243 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 IKZF1Q13422 519 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 C1orf100Q5SVJ3 147 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 AWAT2Q6E213 333 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 GLIPR1L1Q6UWM5 242 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 ZNF841Q6ZN19 808 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 OSR2Q8N2R0 312 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 Q8NFD4 153 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 TBC1D15Q8TC07 691 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 MRPS24Q96EL2 167 aaKnown RBP11.46□□□□□ -0.57
PTCH1-213ENST00000546820 KCTD7Q96MP8 289 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 CHCHD6Q9BRQ6 235 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 OR51E2Q9H255 320 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 PLGRKTQ9HBL7 147 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 HIF1ANQ9NWT6 349 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 POLR3KQ9Y2Y1 108 aaPredicted RBP11.46□□□□□ -0.57
PTCH1-213ENST00000546820 AK6Q9Y3D8 172 aaKnown RBP11.46□□□□□ -0.57
PTCH1-213ENST00000546820 V9GY05 133 aa11.46□□□□□ -0.57
PTCH1-213ENST00000546820 HIVEP1P15822 2718 aa11.45□□□□□ -0.58
PTCH1-213ENST00000546820 A0A0G2JMP0 313 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms