RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PGA3P0DJD8 388 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 ARR3P36575 388 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 GSK3AP49840 483 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 OR2B8PP59922 312 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 CFHR1Q03591 330 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 CATR1Q13166 79 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 CST9LP1Q5W188 147 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 OR1J1Q8NGS3 322 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 AKR1E2Q96JD6 320 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 LPAR5Q9H1C0 372 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 GFOD1Q9NXC2 390 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 AK3Q9UIJ7 227 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 TRGV5A0A0B4J1U4 118 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 TRAF3IP2O43734 574 aaPredicted RBP13.75□□□□□ -0.21
CUX1-211ENST00000546411 CD37P11049 281 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 ZXDAP98168 799 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 ZNF574Q6ZN55 896 aaPredicted RBP13.75□□□□□ -0.21
CUX1-211ENST00000546411 ERRFI1Q9UJM3 462 aaPredicted RBP13.75□□□□□ -0.21
CUX1-211ENST00000546411 RCL1Q9Y2P8 373 aaKnown RBP13.75□□□□□ -0.21
CUX1-211ENST00000546411 A0A1W2PPV4 95 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 PDCD6O75340 191 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 KLK2P20151 261 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 AADACP22760 399 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 PTGER4P35408 488 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 SLC39A9Q9NUM3 307 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 J3QRE1 110 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 IGHV3-13P01766 116 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 IGHV3-7P01780 117 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 MEOX1P50221 254 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 ZP1P60852 638 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 RAB11AP62491 216 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 LAMTOR1Q6IAA8 161 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 THNSL2Q86YJ6 484 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 FRZBQ92765 325 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 G6PC2Q9NQR9 355 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 FBXL17Q9UF56 701 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 GPR31O00270 319 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 ACTL6BO94805 426 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 BAXQ07812 192 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 C2orf68Q2NKX9 166 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 RAB18Q9NP72 206 aa13.75□□□□□ -0.21
CUX1-211ENST00000546411 HELZP42694 1942 aaKnown RBP13.75□□□□□ -0.21
CUX1-211ENST00000546411 PIGBOS1A0A0B4J2F0 54 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 BTCP35070 178 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 ZP4Q12836 540 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 GNG13Q9P2W3 67 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 GPR160Q9UJ42 338 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 TSC22D1Q15714 1073 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 RPUSD3Q6P087 351 aaKnown RBP13.74□□□□□ -0.21
CUX1-211ENST00000546411 MRPL24Q96A35 216 aaKnown RBP13.74□□□□□ -0.21
CUX1-211ENST00000546411 UMAD1C9J7I0 102 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 TAAR5O14804 337 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 KRASP01116 189 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 HBG1P69891 147 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 HBG2P69892 147 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 USF2Q15853 346 aaPredicted RBP13.74□□□□□ -0.21
CUX1-211ENST00000546411 ZNF260Q3ZCT1 412 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 PDLIM3Q53GG5 364 aaPredicted RBP13.74□□□□□ -0.21
CUX1-211ENST00000546411 AVPI1Q5T686 147 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 ANGPTL6Q8NI99 470 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 MITD1Q8WV92 249 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 GPHA2Q96T91 129 aa13.74□□□□□ -0.21
CUX1-211ENST00000546411 HEYLQ9NQ87 328 aaPredicted RBP13.74□□□□□ -0.21
CUX1-211ENST00000546411 MED13LQ71F56 2210 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 ZP3P21754 424 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 TMEM33P57088 247 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 HES3Q5TGS1 186 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 LRRC75AQ8NAA5 344 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 SLX1AQ9BQ83 275 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 FN3KRPQ9HA64 309 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 PLEKHA2Q9HB19 425 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 FAM206AQ9NX38 181 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 FER1L5A0AVI2 2057 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 FAM24AA6NFZ4 105 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 FIGNL2A6NMB9 653 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 TAGLN2P37802 199 aaKnown RBP13.73□□□□□ -0.21
CUX1-211ENST00000546411 JMJD6Q6NYC1 403 aaPredicted RBP13.73□□□□□ -0.21
CUX1-211ENST00000546411 SLC38A6Q8IZM9 456 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 M1APQ8TC57 530 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 FANCMQ8IYD8 2048 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 NMBP08949 121 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 TLE4Q04727 773 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 SOSTQ9BQB4 213 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 SMCO4Q9NRQ5 59 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 POLDIP2Q9Y2S7 368 aa13.73□□□□□ -0.21
CUX1-211ENST00000546411 IFI6P09912 130 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 STARD6P59095 220 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 POLR2GP62487 172 aaKnown RBP eCLIP13.72□□□□□ -0.21
CUX1-211ENST00000546411 CLEC12BQ2HXU8 276 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 MIDNQ504T8 468 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 C17orf78Q8N4C9 275 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 ZNF488Q96MN9 340 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 HES7Q9BYE0 225 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 CHST5Q9GZS9 411 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 OR8B8Q15620 311 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 SNAI3Q3KNW1 292 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 PRSS54Q6PEW0 395 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 LYZL2Q7Z4W2 148 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 RXFP4Q8TDU9 374 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 NIPSNAP3BQ9BS92 247 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms