RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PLEKHJ1Q9NW61 149 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SLC2A8Q9NY64 477 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SCN3BQ9NY72 215 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ONECUT1Q9UBC0 465 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SCML2Q9UQR0 700 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 RNF6Q9Y252 685 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 MRPS33Q9Y291 106 aaKnown RBP1.37□□□□□ -2.19
NUP54-208ENST00000508604 TRAPPC4Q9Y296 219 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 V9GYS6 101 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ABCB11O95342 1321 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 CASKIN1Q8WXD9 1431 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 PRXQ9BXM0 1461 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SYNJ1O43426 1573 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 ABCA8O94911 1581 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 GCC2Q8IWJ2 1684 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 MYO5CQ9NQX4 1742 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 SIPA1L1O43166 1804 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 KIF1BO60333 1816 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 KIF13AQ9H1H9 1805 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 DENND4AQ7Z401 1863 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 MYH8P13535 1937 aa1.37□□□□□ -2.19
NUP54-208ENST00000508604 A0A0A6YYD4 124 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 TGIF2-C20orf24A0A0A6YYL0 155 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 SMCO3A2RU48 225 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 E7EWF7 191 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 TRAPPC2LH3BP13 241 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 M0R3G1 203 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 FAAHO00519 579 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 PDCD5O14737 125 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 RAB29O14966 203 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 PPIHO43447 177 aaKnown RBP1.36□□□□□ -2.19
NUP54-208ENST00000508604 TCF21O43680 179 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 LANCL1O43813 399 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 EDF1O60869 148 aaKnown RBP1.36□□□□□ -2.19
NUP54-208ENST00000508604 UPK3AO75631 287 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 ATG12O94817 140 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 TSPAN13O95857 204 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 C6orf47O95873 294 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 IGSF6O95976 241 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 IGKV1D-16P01601 117 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 IGHG4P01861 327 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 C1QCP02747 245 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 CRYBA1P05813 215 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 CRYGBP07316 175 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 OR8U9P0C7N5 309 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 SLC35G4P0C7Q5 338 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 PET100P0DJ07 73 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 NCK1P16333 377 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 GPX2P18283 190 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 TAC1P20366 129 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 FGF7P21781 194 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 PCMT1P22061 227 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 KDELR1P24390 212 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 F2RP25116 425 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 AK4P27144 223 aaPredicted RBP1.36□□□□□ -2.19
NUP54-208ENST00000508604 HTR2AP28223 471 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 S100GP29377 79 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 CHI3L1P36222 383 aaPredicted RBP1.36□□□□□ -2.19
NUP54-208ENST00000508604 RPS9P46781 194 aaKnown RBP1.36□□□□□ -2.19
NUP54-208ENST00000508604 CSNK1A1P48729 337 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 GEMP55040 296 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 RRAS2P62070 204 aaPredicted RBP1.36□□□□□ -2.19
NUP54-208ENST00000508604 EIF5AP63241 154 aaKnown RBP1.36□□□□□ -2.19
NUP54-208ENST00000508604 EGFEM1PQ0D2K5 195 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 EXOSC2Q13868 293 aaKnown RBP1.36□□□□□ -2.19
NUP54-208ENST00000508604 SF3A2Q15428 464 aaKnown RBP1.36□□□□□ -2.19
NUP54-208ENST00000508604 NSDHLQ15738 373 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 ZSWIM7Q19AV6 140 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 TMEM241Q24JQ0 296 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 PLPPR5Q32ZL2 321 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 CEACAM21Q3KPI0 293 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 ALKBH6Q3KRA9 238 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 AGKQ53H12 422 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 PYY3Q5JQD4 70 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 GCSAMLQ5JQS6 135 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 CTSL3PQ5NE16 218 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 SAMD13Q5VXD3 122 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 LIPKQ5VXJ0 399 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 LAMTOR1Q6IAA8 161 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 EIF5AL1Q6IS14 154 aaKnown RBP1.36□□□□□ -2.19
NUP54-208ENST00000508604 SLC8B1Q6J4K2 584 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 ATRAIDQ6UW56 229 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 FAM131AQ6UXB0 335 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 FBXW12Q6X9E4 464 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 HACD2Q6Y1H2 254 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 RNF165Q6ZSG1 346 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 LANCL3Q6ZV70 420 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 FAM183BPQ6ZVS7 135 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 STRADAQ7RTN6 431 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 SLC36A1Q7Z2H8 476 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 DPY19L4Q7Z388 723 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 C6orf120Q7Z4R8 191 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 S100A7AQ86SG5 101 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 SCD5Q86SK9 330 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 NAA40Q86UY6 237 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 TRAPPC5Q8IUR0 188 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 MFSD6LQ8IWD5 586 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 BOD1L2Q8IYS8 172 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 LGI3Q8N145 548 aa1.36□□□□□ -2.19
NUP54-208ENST00000508604 GTPBP8Q8N3Z3 284 aaPredicted RBP1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms