RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TRA2AQ13595 282 aaKnown RBP eCLIP14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 FAHD2BQ6P2I3 314 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 MCHR2Q969V1 340 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 FAHD2AQ96GK7 314 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 FAM210BQ96KR6 192 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 TXN2Q99757 166 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 A8MXE2 369 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 PATE4P0C8F1 98 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 AADACP22760 399 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 C2orf68Q2NKX9 166 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 AICDAQ9GZX7 198 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 UCK1Q9HA47 277 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 PQLC2LA1A4F0 135 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 HS3ST1O14792 307 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 TOX3O15405 576 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 SMIM10L1P0DMW3 83 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 HLA-DOBP13765 273 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 RCC1P18754 421 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 MPGP29372 298 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 PSMB3P49720 205 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 AADACL3Q5VUY0 350 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 ZNF721Q8TF20 911 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 KCNE4Q8WWG9 221 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 TMEM37Q8WXS4 190 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 ZNF501Q96CX3 271 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 SCARF2Q96GP6 870 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 SMIM10Q96HG1 83 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 NMES1Q9C002 83 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 CCDC187A0A096LP49 1063 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 A0A0G2JK05 382 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 C4orf47A7E2U8 309 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 EPPINO95925 133 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 SPEM2Q0P670 501 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 GCM1Q9NP62 436 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 FIGNL2A6NMB9 653 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 ARTNQ5T4W7 220 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 ZNF66Q6ZN08 573 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 RDH5Q92781 318 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 RHOVQ96L33 236 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 FOXB1Q99853 325 aa14.43□□□□□ -0.1
CCDC88B-209ENST00000494080 H3BP45 60 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 HIST1H1DP16402 221 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 SLC25A26Q70HW3 274 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 ARHGEF39Q8N4T4 335 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 RCL1Q9Y2P8 373 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 TMEM229AB2RXF0 380 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 CLDN1O95832 211 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 ZNF787Q6DD87 383 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 OR51H1Q8NH63 302 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 OR2AE1Q8NHA4 323 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 SERTAD4Q9NUC0 356 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 A0A1B0GV90 55 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 MLF1P58340 268 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 LHX4Q969G2 390 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 CLDN34H7C241 214 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 OR1C1Q15619 314 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 OR8G2PQ6IF36 304 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 OR2Y1Q8NGV0 311 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 SLCO1B1Q9Y6L6 691 aa14.42□□□□□ -0.1
CCDC88B-209ENST00000494080 SPRY1O43609 319 aaPredicted RBP14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 MT-CO3P00414 261 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 FAM157BP0CG42 384 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 RPL29P47914 159 aaKnown RBP14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 CYB5R2Q6BCY4 276 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 TMEM100Q9NV29 134 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 NPTNQ9Y639 398 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 CACNA1HO95180 2353 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 RNF224P0DH78 156 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 COL13A1Q5TAT6 717 aaPredicted RBP14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 MRGPREQ86SM8 312 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 PLEKHA3Q9HB20 300 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 A0A1W2PQD3 144 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 GALNSP34059 522 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 NAAAQ02083 359 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 NSUN5P2Q63ZY6 315 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 ZPBPQ9BS86 351 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 PDCD1Q15116 288 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 C17orf78Q8N4C9 275 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 SNX22Q96L94 193 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 IP6K3Q96PC2 410 aa14.41□□□□□ -0.1
CCDC88B-209ENST00000494080 H3BMH7 237 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 HSD17B6O14756 317 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 PNLIPRP3Q17RR3 467 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 TBC1D28Q2M2D7 210 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 NCR3LG1Q68D85 454 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 KLHDC2Q9Y2U9 406 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 MDFIC2A0A1B0GVS7 189 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 OR5H15A6NDH6 313 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 C17orf51A8MQB3 221 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 GNG12Q9UBI6 72 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 DHRS7BQ6IAN0 325 aaPredicted RBP14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 SPINK14Q6IE38 97 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 CDC20BQ86Y33 519 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 ZADH2Q8N4Q0 377 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 OR13D1Q8NGV5 346 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 OR8U1Q8NH10 309 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 PACRGQ96M98 296 aaPredicted RBP14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 TRIB1Q96RU8 372 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 MFRPQ9BY79 579 aa14.4□□□□□ -0.1
CCDC88B-209ENST00000494080 HEATR5BQ9P2D3 2071 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms