RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 DNAJC3Q13217 504 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 XRCC4Q13426 336 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 GABRA6Q16445 453 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 PRSS8Q16651 343 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 KCTD16Q68DU8 428 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 STUMQ69YW2 141 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 TTC19Q6DKK2 380 aaPredicted RBP1.39□□□□□ -2.19
PTPRC-208ENST00000427110 RWDD4Q6NW29 188 aaKnown RBP1.39□□□□□ -2.19
PTPRC-208ENST00000427110 RTL4Q6ZR62 310 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 C10orf67Q8IYJ2 551 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 OTUD6BQ8N6M0 293 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 LRRC52Q8N7C0 313 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 ZNF645Q8N7E2 425 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 NECAP1Q8NC96 275 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 ZNF721Q8TF20 911 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 RTN4IP1Q8WWV3 396 aaPredicted RBP1.39□□□□□ -2.19
PTPRC-208ENST00000427110 DEDD2Q8WXF8 326 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 SLC25A46Q96AG3 418 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 RPEQ96AT9 228 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 APH1AQ96BI3 265 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 SGTBQ96EQ0 304 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 CHMP6Q96FZ7 201 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 SNF8Q96H20 258 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 BTN2A3PQ96KV6 586 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 RBBP8Q99708 897 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 TIMM29Q9BSF4 260 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 TMEM243Q9BU79 118 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 GGTLC1Q9BX51 225 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 FRMD8P1Q9BZ68 369 aaPredicted RBP1.39□□□□□ -2.19
PTPRC-208ENST00000427110 ING2Q9H160 280 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 STMN4Q9H169 189 aaPredicted RBP1.39□□□□□ -2.19
PTPRC-208ENST00000427110 LHX5Q9H2C1 402 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 GOLPH3Q9H4A6 298 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 LYRM4Q9HD34 91 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 ZNF302Q9NR11 478 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 CHRAC1Q9NRG0 131 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 RGS18Q9NS28 235 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 NRBP2Q9NSY0 501 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 PARVAQ9NVD7 372 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 AHSPQ9NZD4 102 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 SNX24Q9Y343 169 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 CAB39Q9Y376 341 aaPredicted RBP1.39□□□□□ -2.19
PTPRC-208ENST00000427110 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.39□□□□□ -2.19
PTPRC-208ENST00000427110 HES2Q9Y543 173 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 SCN10AQ9Y5Y9 1956 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 TANC1Q9C0D5 1861 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 GOLGB1Q14789 3259 aaKnown RBP1.39□□□□□ -2.19
PTPRC-208ENST00000427110 PTPRJQ12913 1337 aa1.39□□□□□ -2.19
PTPRC-208ENST00000427110 ANKRD36A6QL64 1941 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 DENND4CQ5VZ89 1909 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 COL1A2P08123 1366 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 CASP8AP2Q9UKL3 1982 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 SCN8AQ9UQD0 1980 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 PLXNA3P51805 1871 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 MYO16Q9Y6X6 1858 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 hCG_1818297A0A087WSY0 165 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 GOLGA6L7A0A1B0GV03 622 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 NCF1BA6NI72 391 aaPredicted RBP1.38□□□□□ -2.19
PTPRC-208ENST00000427110 OR5H1A6NKK0 313 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 SIGLEC16A6NMB1 481 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 NCF1CA8MVU1 366 aaPredicted RBP1.38□□□□□ -2.19
PTPRC-208ENST00000427110 ANKRD65E5RJM6 399 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 XRCC2O43543 280 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 SLC16A7O60669 478 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 RAD1O60671 282 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 SERPINB7O75635 380 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 CNMDO75829 334 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 GLSO94925 669 aaPredicted RBP1.38□□□□□ -2.19
PTPRC-208ENST00000427110 TGM6O95932 706 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 CD74P04233 296 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 SHBGP04278 402 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 KRT7P08729 469 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 STAG3L3P0CL85 134 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 RALBP11234 206 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 RAB5AP20339 215 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 KDELR1P24390 212 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 HTR1DP28221 377 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 LOXP28300 417 aaPredicted RBP1.38□□□□□ -2.19
PTPRC-208ENST00000427110 PCK1P35558 622 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 GGT2P36268 569 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 NBL1P41271 181 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 MAGEA6P43360 314 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 PPICP45877 212 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 GPR1P46091 355 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 ACOT2P49753 483 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 GFERP55789 205 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 AP1S2P56377 157 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 YWHAEP62258 255 aaKnown RBP1.38□□□□□ -2.19
PTPRC-208ENST00000427110 IFITM3Q01628 133 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 IRF8Q02556 426 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 IFFO1Q0D2I5 559 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 INCA1Q0VD86 236 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 DMC1Q14565 340 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 YIF1BQ5BJH7 314 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 GCSAMLQ5JQS6 135 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 DNLZQ5SXM8 178 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 LIN9Q5TKA1 542 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 PLCXD3Q63HM9 321 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 SPOPLQ6IQ16 392 aa1.38□□□□□ -2.19
PTPRC-208ENST00000427110 IGFL1Q6UW32 110 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms