RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CBY1Q9Y3M2 126 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 TRAV1-2A0A0B4J238 106 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 FAM221AA4D161 298 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 IFITM5A6NNB3 132 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 PRSS44E7EML9 344 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 NPIPB6E9PJ23 425 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 TMPRSS11DO60235 418 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 SIX6O95475 246 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 CD40P25942 277 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 SRD5A2P31213 254 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 GFERP55789 205 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 UBE2MP61081 183 aaKnown RBP6.13□□□□□ -1.43
SCN1A-204ENST00000423058 GUSBP11Q6P575 273 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 MYPOPQ86VE0 399 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-204ENST00000423058 FAM219AQ8IW50 185 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 OR10D3Q8NH80 312 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 RXFP4Q8TDU9 374 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 LRRC29Q8WV35 223 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 PATE1Q8WXA2 126 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 OR2D2Q9H210 308 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 SLC17A5Q9NRA2 495 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 CACNA1DQ01668 2161 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 OR4E1P0C645 316 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 SLC16A12Q6ZSM3 486 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 RFLNAQ6ZTI6 216 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 ARRDC1Q8N5I2 433 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 OR1L3Q8NH93 324 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 LKAAEAR1Q8TD35 194 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 GPR137Q96N19 417 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 PSG11Q9UQ72 335 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 SPTY2D1-AS1A0A0U1RR47 76 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 A0A1W2PPQ1 181 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 FAM157AC9JC47 383 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 C3orf80F5H4A9 247 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 KLKB1P03952 638 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 CD37P11049 281 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 FOXF1Q12946 379 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF528Q3MIS6 628 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 KHDC3LQ587J8 217 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 RHOUQ7L0Q8 258 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 NKAIN4Q8IVV8 208 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 NFAM1Q8NET5 270 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-204ENST00000423058 OIT3Q8WWZ8 545 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 MCHR2Q969V1 340 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 FAM210BQ96KR6 192 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 RABAC1Q9UI14 185 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 EMCNQ9ULC0 261 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 U3KQ87 197 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 A0A0B4J293 547 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 CCSO14618 274 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 PNPP00491 289 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 TFAP2AP05549 437 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 PRSS1P07477 247 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 MGPP08493 103 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 FAM106CPP0CH98 169 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 TGFBR1P36897 503 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 HIST1H3AP68431 136 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 GAMTQ14353 236 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 SMN1Q16637 294 aaKnown RBP6.13□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF429Q86V71 674 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 LILRB4Q8NHJ6 448 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 PIPOXQ9P0Z9 390 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 VSIG4Q9Y279 399 aa6.13□□□□□ -1.43
SCN1A-204ENST00000423058 CHD3Q12873 2000 aaKnown RBP6.13□□□□□ -1.43
SCN1A-204ENST00000423058 SPRY1O43609 319 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ACAA1P09110 424 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 PDZD11Q5EBL8 140 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 PAQR6Q6TCH4 344 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 OR8I2Q8N0Y5 310 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 OR10A7Q8NGE5 316 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SPOCK3Q9BQ16 436 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 NAT8BQ9UHF3 227 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 WASHC3Q9Y3C0 194 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ABCA3Q99758 1704 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 IFNL4K9M1U5 179 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SYNGR2O43760 224 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 CDAP32320 146 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 EMDP50402 254 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 CLDN18P56856 261 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SOX8P57073 446 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ERVFRD-1P60508 538 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ETFDHQ16134 617 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 Q6ZPB1 254 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 STXBP6Q8NFX7 210 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 OR2G2Q8NGZ5 317 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ISL2Q96A47 359 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 MPC1Q9Y5U8 109 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 R4GN57 208 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ZBTB42B2RXF5 422 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 GPANK1O95872 356 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ASCL1P50553 236 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 PMP22Q01453 160 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF658BQ4V348 819 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 STAC2Q6ZMT1 411 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 LINC00596Q86U02 117 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 RBM45Q8IUH3 476 aaKnown RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 STPG3Q8N7X2 389 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 OR1L6Q8NGR2 347 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 GATA6Q92908 595 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SPACA5Q96QH8 159 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms