RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CGB3P0DN86 165 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CGB7P0DN87 165 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ANXA7P20073 488 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 CHATP28329 748 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 PMELP40967 661 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 RANBP1P43487 201 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 VEGFCP49767 419 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ZNF92Q03936 586 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 PMPCAQ10713 525 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 MFSD13AQ14CX5 517 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ACER2Q5QJU3 275 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 DCAF10Q5QP82 559 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 VAX1Q5SQQ9 334 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 C16orf87Q6PH81 154 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 IGFL3Q6UXB1 125 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 NANOGNBQ7Z5D8 188 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 KRT77Q7Z794 578 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ZNF101Q8IZC7 436 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 TMEM251Q8N6I4 163 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CLEC18CQ8NCF0 446 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 OR4S1Q8NGB4 309 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 OR1S1Q8NH92 325 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 RAB40AQ8WXH6 277 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 LINC00476Q8WZB0 136 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 DYRK2Q92630 601 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 BCL2L2Q92843 193 aaPredicted RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 RFT1Q96AA3 541 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 DDIT4LQ96D03 193 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 GFM1Q96RP9 751 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 C7orf50Q9BRJ6 194 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 BEX2Q9BXY8 128 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 TMEM185BQ9H7F4 350 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 IL36RNQ9UBH0 155 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 SLC25A10Q9UBX3 287 aaPredicted RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 GPR132Q9UNW8 380 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 FAM215AQ9Y5M1 114 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 SPACA6W5XKT8 324 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 MAP1AP78559 2803 aaPredicted RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 PCNX1Q96RV3 2341 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 A0A0A6YYH2 397 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 MFSD2BA6NFX1 497 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 OR5H14A6NHG9 310 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 A6NIZ1 184 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 A6NJ64 397 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 SNRPGP15A8MWD9 76 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 A8MXK9 166 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 C21orf140B9A014 251 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 NKX2-8O15522 239 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 TRIAP1O43715 76 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 OR2T1O43869 369 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 RAD1O60671 282 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 IGKV1-39P01597 117 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 IGKV1D-39P04432 117 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 SFTPBP07988 381 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 ACAA1P09110 424 aaPredicted RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 GP1BBP13224 206 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 IGFBP2P18065 325 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 IL12BP29460 328 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 AGTR1P30556 359 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 IFNA8P32881 189 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 PTGER4P35408 488 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 SOX6P35712 828 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 RAP1BP61224 184 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 RAP1AP62834 184 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 SCN1BQ07699 218 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 C1DQ13901 141 aaKnown RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 TRIM16LQ309B1 348 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 ANKRD55Q3KP44 614 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 AARDQ4LEZ3 155 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 C1QTNF12Q5T7M4 302 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 TSPO2Q5TGU0 170 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 ABHD17BQ5VST6 288 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 ZNF782Q6ZMW2 699 aaPredicted RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 OR2W3Q7Z3T1 314 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 AKAP14Q86UN6 197 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 Q8N1X5 172 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 EIF4E3Q8N5X7 224 aaKnown RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 OR1M1Q8NGA1 313 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 OR6N2Q8NGY6 317 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 OR10D3Q8NH80 312 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 OR51E1Q8TCB6 317 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 WIPF2Q8TF74 440 aaPredicted RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 ROBO4Q8WZ75 1007 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 HAS2Q92819 552 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 NXPE2Q96DL1 559 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 C18orf12Q96KH6 178 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 SEC22CQ9BRL7 303 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 TM2D2Q9BX73 214 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 ZNF436Q9C0F3 470 aaPredicted RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 OR2H1Q9GZK4 316 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 NUDT15Q9NV35 164 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 P4HTMQ9NXG6 502 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 EMC3Q9P0I2 261 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 RPS6KB2Q9UBS0 482 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 MGAT4AQ9UM21 535 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 ZNF835Q9Y2P0 537 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 ZNF175Q9Y473 711 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 R4GN57 208 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 TLN1Q9Y490 2541 aaKnown RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 HMSDA8MTL9 139 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms