RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 J3QLI3 93 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 ADAM20O43506 726 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 RGS9O75916 674 aaPredicted RBP15.11■□□□□ 0.01
CLN3-243ENST00000635973 CD1AP06126 327 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 LIPKQ5VXJ0 399 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 C12orf54Q6X4T0 127 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 FAM90A1Q86YD7 464 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 CALHM1Q8IU99 346 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 BATF2Q8N1L9 274 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 POC1AQ8NBT0 407 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 THRSPQ92748 146 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 RFT1Q96AA3 541 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 TMIGD2Q96BF3 282 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 NEIL1Q96FI4 390 aaPredicted RBP15.11■□□□□ 0.01
CLN3-243ENST00000635973 CPNE2Q96FN4 548 aaPredicted RBP15.11■□□□□ 0.01
CLN3-243ENST00000635973 SPACA5Q96QH8 159 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 OR14A2Q96R54 314 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 WDR13Q9H1Z4 485 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 SNTG1Q9NSN8 517 aa15.11■□□□□ 0.01
CLN3-243ENST00000635973 IGKV1-27A0A075B6S5 117 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 NKX6-3A6NJ46 265 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 ZNF879B4DU55 563 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 F5H0A9 414 aaPredicted RBP15.1■□□□□ 0.01
CLN3-243ENST00000635973 NDUFA2O43678 99 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 FOXH1O75593 365 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 INMTO95050 263 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 NXPH2O95156 264 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 PGA5P0DJD9 388 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 EPHA1P21709 976 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 GATA3P23771 443 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 MAPK3P27361 379 aaPredicted RBP15.1■□□□□ 0.01
CLN3-243ENST00000635973 PITPNBP48739 271 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 SEC61A1P61619 476 aaKnown RBP15.1■□□□□ 0.01
CLN3-243ENST00000635973 GNB2P62879 340 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 LCN2P80188 198 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 IL24Q13007 206 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 MLLT11Q13015 90 aaPredicted RBP15.1■□□□□ 0.01
CLN3-243ENST00000635973 SMIM21Q3B7S5 101 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 SLC25A26Q70HW3 274 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.1■□□□□ 0.01
CLN3-243ENST00000635973 NANPQ8TBE9 248 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 ZFAND2BQ8WV99 257 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 SLAMF9Q96A28 289 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 C12orf43Q96C57 262 aaKnown RBP15.1■□□□□ 0.01
CLN3-243ENST00000635973 SEH1LQ96EE3 360 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 ZNF488Q96MN9 340 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 JMJD8Q96S16 334 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 ACOT13Q9NPJ3 140 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 NLKQ9UBE8 527 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 LRCH1Q9Y2L9 728 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 WNK2Q9Y3S1 2297 aa15.1■□□□□ 0.01
CLN3-243ENST00000635973 A0A1W2PPK0 400 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.09■□□□□ 0.01
CLN3-243ENST00000635973 TMPRSS2O15393 492 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 VENTXO95231 258 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 CPT2P23786 658 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 MPZP25189 248 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 RPS11P62280 158 aaKnown RBP eCLIP15.09■□□□□ 0.01
CLN3-243ENST00000635973 ACTG1P63261 375 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 LYPD2Q6UXB3 125 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 SLC36A1Q7Z2H8 476 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 SATL1Q86VE3 508 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 MKXQ8IYA7 352 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 MS4A15Q8N5U1 240 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 OR5T2Q8NGG2 359 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 OR5D18Q8NGL1 313 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 GPER1Q99527 375 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 MGLLQ99685 303 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 SSBP3Q9BWW4 388 aaPredicted RBP15.09■□□□□ 0.01
CLN3-243ENST00000635973 C7orf69Q9H7B7 122 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 ISYNA1Q9NPH2 558 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 RASL12Q9NYN1 266 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 CLN8Q9UBY8 286 aa15.09■□□□□ 0.01
CLN3-243ENST00000635973 TRIM77I1YAP6 450 aa15.08■□□□□ 0
CLN3-243ENST00000635973 SPRY1O43609 319 aaPredicted RBP15.08■□□□□ 0
CLN3-243ENST00000635973 ALX3O95076 343 aa15.08■□□□□ 0
CLN3-243ENST00000635973 WNT2P09544 360 aa15.08■□□□□ 0
CLN3-243ENST00000635973 GABRA2P47869 451 aa15.08■□□□□ 0
CLN3-243ENST00000635973 EMX1Q04741 257 aaPredicted RBP15.08■□□□□ 0
CLN3-243ENST00000635973 GPR50Q13585 617 aa15.08■□□□□ 0
CLN3-243ENST00000635973 KISS1Q15726 138 aa15.08■□□□□ 0
CLN3-243ENST00000635973 KCTD21Q4G0X4 260 aa15.08■□□□□ 0
CLN3-243ENST00000635973 ZNF773Q6PK81 442 aa15.08■□□□□ 0
CLN3-243ENST00000635973 C1QL2Q7Z5L3 287 aa15.08■□□□□ 0
CLN3-243ENST00000635973 BPIFB2Q8N4F0 458 aa15.08■□□□□ 0
CLN3-243ENST00000635973 OR51A2Q8NGJ7 313 aa15.08■□□□□ 0
CLN3-243ENST00000635973 ORAI1Q96D31 301 aa15.08■□□□□ 0
CLN3-243ENST00000635973 CEP19Q96LK0 163 aa15.08■□□□□ 0
CLN3-243ENST00000635973 DERL3Q96Q80 235 aa15.08■□□□□ 0
CLN3-243ENST00000635973 CCL13Q99616 98 aa15.08■□□□□ 0
CLN3-243ENST00000635973 NRIP2Q9BQI9 281 aa15.08■□□□□ 0
CLN3-243ENST00000635973 TMPRSS13Q9BYE2 586 aa15.08■□□□□ 0
CLN3-243ENST00000635973 FAM192AQ9GZU8 254 aa15.08■□□□□ 0
CLN3-243ENST00000635973 OR5V1Q9UGF6 321 aa15.08■□□□□ 0
CLN3-243ENST00000635973 LRRC42Q9Y546 428 aa15.08■□□□□ 0
CLN3-243ENST00000635973 OR2AT4A6NND4 320 aa15.07■□□□□ 0
CLN3-243ENST00000635973 TRAPPC2LH3BP13 241 aa15.07■□□□□ 0
CLN3-243ENST00000635973 NOS1APO75052 506 aaPredicted RBP15.07■□□□□ 0
CLN3-243ENST00000635973 CPEP16870 476 aa15.07■□□□□ 0
CLN3-243ENST00000635973 ADRA2CP18825 462 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms