RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 GAFA1Q96PS6 74 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 NRIP2Q9BQI9 281 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 MND1Q9BWT6 205 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 ZCCHC4Q9H5U6 513 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 ZNF222Q9UK12 451 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 TPRKBQ9Y3C4 175 aa11.2□□□□□ -0.62
LINC00540-202ENST00000616974 RFPL4AA6NLU0 287 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 OR2AT4A6NND4 320 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 RFPL4AL1F8VTS6 287 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 DVL1O14640 695 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 SFTPBP07988 381 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 ERVK11-1P61568 191 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 PDCD1Q15116 288 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 MICBQ29980 383 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 ZNF529Q6P280 563 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 MUC20Q8N307 709 aaPredicted RBP11.19□□□□□ -0.62
LINC00540-202ENST00000616974 GPR148Q8TDV2 347 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 RAB39BQ96DA2 213 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 SSBP3Q9BWW4 388 aaPredicted RBP11.19□□□□□ -0.62
LINC00540-202ENST00000616974 DNAJB11Q9UBS4 358 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 OR14J1Q9UGF5 321 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 OPN4Q9UHM6 478 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 KCNS2Q9ULS6 477 aa11.19□□□□□ -0.62
LINC00540-202ENST00000616974 RGS9O75916 674 aaPredicted RBP11.18□□□□□ -0.62
LINC00540-202ENST00000616974 FUT6P51993 359 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 RPS25P62851 125 aaKnown RBP11.18□□□□□ -0.62
LINC00540-202ENST00000616974 EMX1Q04741 257 aaPredicted RBP11.18□□□□□ -0.62
LINC00540-202ENST00000616974 PRSS48Q7RTY5 328 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 ZNF573Q86YE8 665 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 POC1AQ8NBT0 407 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 DNAAF1Q8NEP3 725 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 OR51F2Q8NH61 342 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 NEIL1Q96FI4 390 aaPredicted RBP11.18□□□□□ -0.62
LINC00540-202ENST00000616974 NLKQ9UBE8 527 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 IGHV3OR16-10A0A075B7F0 116 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 TRAV38-1A0A0B4J264 116 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 IFNL4K9M1U5 179 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 SULT1B1O43704 296 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 CRLF1O75462 422 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 GATBO75879 557 aaKnown RBP11.18□□□□□ -0.62
LINC00540-202ENST00000616974 GABRA2P47869 451 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 RBP2P50120 134 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 ZP1P60852 638 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 GNB2P62879 340 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 MZT1Q08AG7 82 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 ESCO2Q56NI9 601 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 RNLSQ5VYX0 342 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 SERPINA12Q8IW75 414 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 OR10K1Q8NGX5 313 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 OR10Z1Q8NGY1 313 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 C22orf15Q8WYQ4 148 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 ST8SIA4Q92187 359 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 HES4Q9HCC6 221 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 CLN8Q9UBY8 286 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 SLC7A11Q9UPY5 501 aa11.18□□□□□ -0.62
LINC00540-202ENST00000616974 A0A1W2PP11 408 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 PCMT1P22061 227 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 OR3A4PP47883 348 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 DVL1P1P54792 670 aaPredicted RBP11.17□□□□□ -0.62
LINC00540-202ENST00000616974 ERVFRD-1P60508 538 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 MRPL28Q13084 256 aaKnown RBP11.17□□□□□ -0.62
LINC00540-202ENST00000616974 KISS1Q15726 138 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 SSX1Q16384 188 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 Q499Y3 187 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 RBM48Q5RL73 367 aaKnown RBP11.17□□□□□ -0.62
LINC00540-202ENST00000616974 ZNF788Q6ZQV5 615 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 SATL1Q86VE3 508 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 GLCCI1Q86VQ1 547 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 OR8B3Q8NGG8 313 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 DERL3Q96Q80 235 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 OR8B2Q96RD0 313 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 ABCB9Q9NP78 766 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 NOX4Q9NPH5 578 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 ACOT13Q9NPJ3 140 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 MIOXQ9UGB7 285 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 TRBV5-7A0A0A0MS05 114 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 A8MXK9 166 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 NXPH2O95156 264 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 CDRT1O95170 752 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 SERPINA3P01011 423 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 HCKP08631 526 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 MUC1P15941 1255 aaPredicted RBP11.17□□□□□ -0.62
LINC00540-202ENST00000616974 IGFBP3P17936 291 aaPredicted RBP11.17□□□□□ -0.62
LINC00540-202ENST00000616974 IL24Q13007 206 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 PDZK1IP1Q13113 114 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 CNN3Q15417 329 aaKnown RBP11.17□□□□□ -0.62
LINC00540-202ENST00000616974 DCAF12L2Q5VW00 463 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 TMIGD2Q96BF3 282 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 C10orf35Q96D05 121 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 POM121Q96HA1 1249 aa11.17□□□□□ -0.62
LINC00540-202ENST00000616974 GABRPO00591 440 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 MAS1P04201 325 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 ZNF12P17014 697 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 ACSM1Q08AH1 577 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 TMEM91Q6ZNR0 172 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 BTN2A1Q7KYR7 527 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 EGFL6Q8IUX8 553 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 SPARTQ8N0X7 666 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 OR5D14Q8NGL3 314 aa11.16□□□□□ -0.62
LINC00540-202ENST00000616974 CEP19Q96LK0 163 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms