RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 STMN3Q9NZ72 180 aa1.94□□□□□ -2.1
SMCHD1-204ENST00000581226 ENPP4Q9Y6X5 453 aa1.94□□□□□ -2.1
SMCHD1-204ENST00000581226 CACNA1DQ01668 2161 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 ZBED9Q6R2W3 1325 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 VWA8A3KMH1 1905 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 IZUMO1RA6ND01 250 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 CENPXA8MT69 81 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 J3QRE1 110 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 J3QT63 122 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 KCNK2O95069 426 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 VAPBO95292 243 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 OR5AC1P0C628 307 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 MTPNP58546 118 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 PSMC5P62195 406 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 SLC35A1P78382 337 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 TNFRSF9Q07011 255 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 ADIGQ0VDE8 80 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 DYNC1I2Q13409 638 aaKnown RBP1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 LINC00303Q3SY05 128 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 FAM19A1Q7Z5A9 133 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 ARHGAP18Q8N392 663 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 ASCC1Q8N9N2 400 aaKnown RBP1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 OR2M7Q8NG81 312 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 OR4D6Q8NGJ1 314 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 OR4C13Q8NGP0 309 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 TNFRSF14Q92956 283 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 RBPMSQ93062 196 aaKnown RBP1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 CENPNQ96H22 339 aaPredicted RBP1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 VSIRQ9H7M9 311 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 SND1-IT1Q9HBX3 110 aa1.93□□□□□ -2.1
SMCHD1-204ENST00000581226 TRAV8-6A0A0B4J262 113 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 GSTTP1A0A1W2PQM5 241 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 RFXANKO14593 260 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 IGHG2P01859 326 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 ARL2P36404 184 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 TGFBR2P37173 567 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 MEF2CQ06413 473 aaPredicted RBP1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 FMODQ06828 376 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 IFFO1Q0D2I5 559 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 TRDNQ13061 729 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 SLC9A3R2Q15599 337 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 ATP6V1FQ16864 119 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 FAM27D1Q5T7N8 215 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 ZNF660Q6AZW8 331 aaPredicted RBP1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 AMMECR1LQ6DCA0 310 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 FA2HQ7L5A8 372 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 SETD3Q86TU7 594 aaPredicted RBP1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 SLC7A5P1Q8MH63 180 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 CYB561A3Q8NBI2 242 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 OR13C9Q8NGT0 318 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 OR10Z1Q8NGY1 313 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 YIPF5Q969M3 257 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 LRRC39Q96DD0 335 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 API5Q9BZZ5 524 aaKnown RBP1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 STMN4Q9H169 189 aaPredicted RBP1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 TFR2Q9UP52 801 aa1.92□□□□□ -2.1
SMCHD1-204ENST00000581226 ELP1O95163 1332 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 NPHP4O75161 1426 aaPredicted RBP1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 ANKRD20A5PA0PJZ0 165 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 TVP23AA6NH52 213 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 C15orf65H3BRN8 121 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 ALOX12BO75342 701 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 SLC35G6P0C7Q6 338 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 LIPCP11150 499 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 PTNP21246 168 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 HTR2CP28335 458 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 GZMMP51124 257 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 KLF3P57682 345 aaPredicted RBP1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 TAL2Q16559 108 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 LDLRAD2Q5SZI1 272 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 C6orf183Q5T699 404 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 WDR59Q6PJI9 974 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 TRMT10CQ7L0Y3 403 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 PAGE2Q7Z2X7 111 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 ITPRIPQ8IWB1 547 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 FAM58AQ8N1B3 248 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 SYS1Q8N2H4 156 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 PDCL2Q8N4E4 241 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 ITLN2Q8WWU7 325 aaPredicted RBP1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 FAM131CQ96AQ9 280 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 RNF170Q96K19 258 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 ABCG5Q9H222 651 aa1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 MCTS1Q9ULC4 181 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-204ENST00000581226 TRAV8-4A0A0B4J246 113 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 P01737 135 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 SEC11BP0C7V7 166 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 ST3GAL4Q11206 333 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 ZNF141Q15928 474 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 FBXL19-AS1Q494R0 122 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 MRPL2Q5T653 305 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 LIN9Q5TKA1 542 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 DUPD1Q68J44 220 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 THOC7Q6I9Y2 204 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 PID1Q7Z2X4 250 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 PRNTQ86SH4 94 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 ZFP62Q8NB50 900 aaPredicted RBP1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 OR6K6Q8NGW6 343 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 OR8K3Q8NH51 312 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 NDNFQ8TB73 568 aa1.9□□□□□ -2.11
SMCHD1-204ENST00000581226 FAM57AQ8TBR7 257 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms