RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 C12orf43Q96C57 262 aaKnown RBP13.55□□□□□ -0.24
CHMP1A-209ENST00000550872 DERL3Q96Q80 235 aa13.55□□□□□ -0.24
CHMP1A-209ENST00000550872 NLKQ9UBE8 527 aa13.55□□□□□ -0.24
CHMP1A-209ENST00000550872 LRCH1Q9Y2L9 728 aa13.55□□□□□ -0.24
CHMP1A-209ENST00000550872 ARHGAP32A7KAX9 2087 aa13.55□□□□□ -0.24
CHMP1A-209ENST00000550872 SONP18583 2426 aaKnown RBP13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 PIN1P1O15428 100 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 SPRY1O43609 319 aaPredicted RBP13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 FOXH1O75593 365 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 GPX5O75715 221 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 MSMBP08118 114 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 ACAA1P09110 424 aaPredicted RBP13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 IGFBP3P17936 291 aaPredicted RBP13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 PCMT1P22061 227 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 BDKRB2P30411 391 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 PITPNBP48739 271 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 RPS25P62851 125 aaKnown RBP13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 LCN2P80188 198 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 PDZK1IP1Q13113 114 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 INSL4Q14641 139 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 KISS1Q15726 138 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 SMIM21Q3B7S5 101 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 UNQ9370/PRO34162Q6UXP9 181 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 ACP7Q6ZNF0 438 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 PHC2Q8IXK0 858 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 OR52N4Q8NGI2 321 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 OR5D18Q8NGL1 313 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 CEP19Q96LK0 163 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 GPER1Q99527 375 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 CCL13Q99616 98 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 NRIP2Q9BQI9 281 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 NOX4Q9NPH5 578 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 TMEM138Q9NPI0 162 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 MTCH1Q9NZJ7 389 aa13.54□□□□□ -0.24
CHMP1A-209ENST00000550872 TRAV8-7A0A075B6U6 113 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 OR2AT4A6NND4 320 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 A8MV72 311 aaPredicted RBP13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 TRAPPC2LH3BP13 241 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 PHF1O43189 567 aaPredicted RBP13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 ANGPTL7O43827 346 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 TNFAIP8O95379 198 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 ALDOBP05062 364 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 TMEM225BP0DP42 221 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 FSTP19883 344 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 ZFP36P26651 326 aaKnown RBP13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 PSMB9P28065 219 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 GABRA2P47869 451 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 ERVK11-1P61568 191 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 GNB2P62879 340 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 TRAM1Q15629 374 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 UBE2UQ5VVX9 321 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 CEACAM19Q7Z692 300 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 GLCCI1Q86VQ1 547 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 FCGR1BQ92637 280 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 TMEM186Q96B77 213 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 CPNE2Q96FN4 548 aaPredicted RBP13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 SSBP3Q9BWW4 388 aaPredicted RBP13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 KAAG1Q9UBP8 84 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 CTSZQ9UBR2 303 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 CLN8Q9UBY8 286 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 KCNS2Q9ULS6 477 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 FOXJ3Q9UPW0 622 aa13.53□□□□□ -0.24
CHMP1A-209ENST00000550872 TRAV20A0A0B4J274 112 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 TMPRSS2O15393 492 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 MAS1P04201 325 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 PSG2P11465 335 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 AMY2BP19961 511 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 PSMA1P25786 263 aaKnown RBP13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 DVL1P1P54792 670 aaPredicted RBP13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 ATPAF1Q5TC12 328 aaPredicted RBP13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 DDI2Q5TDH0 399 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 WDR25Q64LD2 544 aaPredicted RBP13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 STUMQ69YW2 141 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 CRIP3Q6Q6R5 217 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 SLC36A1Q7Z2H8 476 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 ANGPTL6Q8NI99 470 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 HES4Q9HCC6 221 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 HIF1ANQ9NWT6 349 aa13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 SF3B6Q9Y3B4 125 aaKnown RBP13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 NSD1Q96L73 2696 aaPredicted RBP13.52□□□□□ -0.25
CHMP1A-209ENST00000550872 ZANQ9Y493 2812 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 NKX6-3A6NJ46 265 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 RFPL4AA6NLU0 287 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 A8MXK9 166 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 RFPL4AL1F8VTS6 287 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 F8VVB4 439 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 F8VWA3 439 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 SC5DO75845 299 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 RGS9O75916 674 aaPredicted RBP13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 TFF1P04155 84 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 BCL3P20749 454 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 GABRA5P31644 462 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 ZNF93P35789 620 aaPredicted RBP13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 NPBWR2P48146 333 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 ZP1P60852 638 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 SSX1Q16384 188 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 FAM27D1Q5T7N8 215 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 ZNF841Q6ZN19 808 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 Q8IYB0 196 aa13.51□□□□□ -0.25
CHMP1A-209ENST00000550872 SAXO1Q8IYX7 474 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms