RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 METRNQ9UJH8 293 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 POLDIP2Q9Y2S7 368 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 MAB21L2Q9Y586 359 aa10.74□□□□□ -0.69
VPS28-216ENST00000533806 ENSAO43768 121 aaKnown RBP10.73□□□□□ -0.69
VPS28-216ENST00000533806 ECDO95905 644 aaPredicted RBP10.73□□□□□ -0.69
VPS28-216ENST00000533806 LIPFP07098 398 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 MMP9P14780 707 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 ZNF20P17024 532 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 PRKACBP22694 351 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 AZGP1P25311 298 aaKnown RBP10.73□□□□□ -0.69
VPS28-216ENST00000533806 RBP2P50120 134 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 CNN3Q15417 329 aaKnown RBP10.73□□□□□ -0.69
VPS28-216ENST00000533806 BTNL3Q6UXE8 466 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 AHSA2Q719I0 299 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 BTN2A1Q7KYR7 527 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 SERPINA12Q8IW75 414 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 CD177Q8N6Q3 437 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 NANOGP1Q8N7R0 232 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 C8orf46Q8TAG6 207 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 SPSB1Q96BD6 273 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 SMIM19Q96E16 107 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 BORCS8Q96FH0 119 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 MED30Q96HR3 178 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 MDFIQ99750 246 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 MRI1Q9BV20 369 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 COMMD4Q9H0A8 199 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 VCX3BQ9H321 246 aa10.73□□□□□ -0.69
VPS28-216ENST00000533806 PAK1IP1Q9NWT1 392 aaPredicted RBP10.73□□□□□ -0.69
VPS28-216ENST00000533806 RPUSD1Q9UJJ7 312 aaKnown RBP10.73□□□□□ -0.69
VPS28-216ENST00000533806 RFPL4AA6NLU0 287 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 ZNF879B4DU55 563 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 RFPL4AL1F8VTS6 287 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 H0YHG0 523 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 SLC1A7O00341 560 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 PLATP00750 562 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 EPHA1P21709 976 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 PRDX2P32119 198 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 ATP1B3P54709 279 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 CAV3P56539 151 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 FGF12P61328 243 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 RPS11P62280 158 aaKnown RBP eCLIP10.72□□□□□ -0.69
VPS28-216ENST00000533806 SLC35A2P78381 396 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 IL13RA1P78552 427 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 MED21Q13503 144 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 SMIM21Q3B7S5 101 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 IZUMO2Q6UXV1 221 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 SLC25A26Q70HW3 274 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 ZNRF1Q8ND25 227 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 OR5D14Q8NGL3 314 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 OR13C9Q8NGT0 318 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 GPR148Q8TDV2 347 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 SGCDQ92629 289 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 GHSRQ92847 366 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 PGLYRP3Q96LB9 341 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 CEP19Q96LK0 163 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 DCTN5Q9BTE1 182 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 CDCA4Q9BXL8 241 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 DUSP21Q9H596 190 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 ZCCHC4Q9H5U6 513 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 SEBOXQ9HB31 216 aaPredicted RBP10.72□□□□□ -0.69
VPS28-216ENST00000533806 CHCHD3Q9NX63 227 aaKnown RBP10.72□□□□□ -0.69
VPS28-216ENST00000533806 STAB1Q9NY15 2570 aa10.72□□□□□ -0.69
VPS28-216ENST00000533806 A0A0A6YYJ9 748 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 IGKV1-12A0A0C4DH73 117 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 TRBV5-5A0A0J9YX44 114 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 NDUFB3O43676 98 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 NXPH2O95156 264 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 KNG1P01042 644 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 IGKV1D-12P01611 117 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 CD1AP06126 327 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 CDK1P06493 297 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 MTCP1P56278 107 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 PDZK1IP1Q13113 114 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 IKZF1Q13422 519 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 IRF3Q14653 427 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 LRRC10Q5BKY1 277 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 LHFPL2Q6ZUX7 228 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 C9orf139Q6ZV77 190 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 USP43Q70EL4 1123 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 STX19Q8N4C7 294 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 PNLDC1Q8NA58 520 aaKnown RBP10.71□□□□□ -0.69
VPS28-216ENST00000533806 ST8SIA4Q92187 359 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 SLAMF9Q96A28 289 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 OPALINQ96PE5 141 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 TBX15Q96SF7 602 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 SIRPDQ9H106 197 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 CNTD2Q9H8S5 307 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 NUP50Q9UKX7 468 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 DHDHQ9UQ10 334 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 ZNF281Q9Y2X9 895 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 LSM2Q9Y333 95 aaKnown RBP10.71□□□□□ -0.69
VPS28-216ENST00000533806 PCDHGB5Q9Y5G0 923 aa10.71□□□□□ -0.69
VPS28-216ENST00000533806 NKX6-3A6NJ46 265 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 SULT1B1O43704 296 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 SFTPBP07988 381 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 IGHV4-38-2P0DP08 117 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 NPBWR2P48146 333 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 HSPA13P48723 471 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 WNT4P56705 351 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 ZP1P60852 638 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms