RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	ST3GAL4	Q11206	333 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	CNN3	Q15417	329 aa	Known RBP	12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	CTF1	Q16619	201 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	ATPAF1	Q5TC12	328 aa	Predicted RBP	12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	C1QL2	Q7Z5L3	287 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	MINDY2	Q8NBR6	621 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	POC1A	Q8NBT0	407 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	OR51A4	Q8NGJ6	313 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	OR13C3	Q8NGS6	347 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	OR52N1	Q8NH53	320 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	OR5AK2	Q8NH90	309 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	RPS4Y2	Q8TD47	263 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	SEH1L	Q96EE3	360 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	PDCD1LG2	Q9BQ51	273 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	PKIB	Q9C010	78 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	COMMD4	Q9H0A8	199 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	OCEL1	Q9H607	264 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	SMURF1	Q9HCE7	757 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	ACOT13	Q9NPJ3	140 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	FKBP14	Q9NWM8	211 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	CHCHD3	Q9NX63	227 aa	Known RBP	12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	NLK	Q9UBE8	527 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	DNAJB11	Q9UBS4	358 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	OPN4	Q9UHM6	478 aa		12.51	□□□□□ -0.41
CPSF1-208	ENST00000532560	DOCK11	Q5JSL3	2073 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	LOC105371242	A0A075B767	164 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	TMPRSS2	O15393	492 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	SYNGR1	O43759	233 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	NOS1AP	O75052	506 aa	Predicted RBP	12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	INMT	O95050	263 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	PGA5	P0DJD9	388 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	GLRA1	P23415	457 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	FUT6	P51993	359 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	CDK5R1	Q15078	307 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	OR2G6	Q5TZ20	316 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	RPL22L1	Q6P5R6	122 aa	Known RBP	12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	C16orf87	Q6PH81	154 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	BTNL3	Q6UXE8	466 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	AHSA2	Q719I0	299 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	SLC36A1	Q7Z2H8	476 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	DNAAF1	Q8NEP3	725 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	ANGPTL6	Q8NI99	470 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	TRMT10A	Q8TBZ6	339 aa	Known RBP	12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	RAB40A	Q8WXH6	277 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	FGGY	Q96C11	551 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	C7orf69	Q9H7B7	122 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	RASL12	Q9NYN1	266 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	CLEC2D	Q9UHP7	191 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	A3GALT2	U3KPV4	340 aa		12.5	□□□□□ -0.41
CPSF1-208	ENST00000532560	IGKV1-27	A0A075B6S5	117 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	IGKV1-9	A0A0C4DH69	117 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	TRBV2	A0A0J9YWF9	115 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	FAM230A	A0A1W2PPH8	454 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	NKX6-3	A6NJ46	265 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	C22orf46	C9J442	243 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	DVL1	O14640	695 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	ENSA	O43768	121 aa	Known RBP	12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	FCN3	O75636	299 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	FSHB	P01225	129 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	MT-ND2	P03891	347 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	ACAA1	P09110	424 aa	Predicted RBP	12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	PPIAL4G	P0DN37	164 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	GMFB	P60983	142 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	PAX8	Q06710	450 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	IL24	Q13007	206 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	SCGB2A2	Q13296	93 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	SMIM21	Q3B7S5	101 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	CD276	Q5ZPR3	534 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	CALHM1	Q8IU99	346 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	FAM216B	Q8N7L0	139 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	ZNF485	Q8NCK3	441 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	NPRL2	Q8WTW4	380 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	SPSB1	Q96BD6	273 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	BORCS8	Q96FH0	119 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	CCL13	Q99616	98 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	NRIP2	Q9BQI9	281 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	NUDT16L1	Q9BRJ7	211 aa	Known RBP	12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	MRI1	Q9BV20	369 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	SNTG1	Q9NSN8	517 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	BABAM2	Q9NXR7	383 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	AUP1	Q9Y679	476 aa		12.49	□□□□□ -0.41
CPSF1-208	ENST00000532560	DNHD1	Q96M86	4753 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	KIR2DS1	A0A191URI9	304 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560		A0A1B0GW55	424 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	OR2AT4	A6NND4	320 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	CDK1	P06493	297 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	DUX4L2	P0CJ85	424 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	DUX4L3	P0CJ86	424 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	DUX4L4	P0CJ87	422 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	DUX4L5	P0CJ88	424 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	DUX4L6	P0CJ89	424 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	DUX4L7	P0CJ90	424 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	ATF1	P18846	271 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	AMY2B	P19961	511 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	PRKACB	P22694	351 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	BMX	P51813	675 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	DUX4L9	Q6RFH8	374 aa	Predicted RBP	12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	ACP7	Q6ZNF0	438 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	ZNF788	Q6ZQV5	615 aa		12.48	□□□□□ -0.41
CPSF1-208	ENST00000532560	STX19	Q8N4C7	294 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms