RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 SLIRPQ9GZT3 109 aaKnown RBP-2.95□□□□□ -2.88
RNU6-539P-201ENST00000516665 VCX3BQ9H321 246 aa-2.95□□□□□ -2.88
RNU6-539P-201ENST00000516665 PIGUQ9H490 435 aa-2.95□□□□□ -2.88
RNU6-539P-201ENST00000516665 SYTL2Q9HCH5 934 aa-2.95□□□□□ -2.88
RNU6-539P-201ENST00000516665 TMEM9BQ9NQ34 198 aa-2.95□□□□□ -2.88
RNU6-539P-201ENST00000516665 PFDN4Q9NQP4 134 aa-2.95□□□□□ -2.88
RNU6-539P-201ENST00000516665 NRBP2Q9NSY0 501 aa-2.95□□□□□ -2.88
RNU6-539P-201ENST00000516665 TIMM10BQ9Y5J6 103 aa-2.95□□□□□ -2.88
RNU6-539P-201ENST00000516665 CHD8Q9HCK8 2581 aa-2.95□□□□□ -2.88
RNU6-539P-201ENST00000516665 CUX2O14529 1486 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 C2orf74A8MZ97 194 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 STARD3NLO95772 234 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 CFDP00746 253 aaPredicted RBP-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 CTSEP14091 401 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 U2AF2P26368 475 aaKnown RBP eCLIP-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 PRDX6P30041 224 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 GRIA1P42261 906 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 CASP3P42574 277 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 PLA2G16P53816 162 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 GGTA1PQ4G0N0 100 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 CAVIN1Q6NZI2 390 aaKnown RBP-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 CCDC121Q6ZUS5 278 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 ACOT1Q86TX2 421 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 NUDCD3Q8IVD9 361 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 OR5H2Q8NGV7 314 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 MAGEE2Q8TD90 523 aaPredicted RBP-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 ZNF418Q8TF45 676 aaPredicted RBP-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 AQP3Q92482 292 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 MAL2Q969L2 176 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 EFHD2Q96C19 240 aaPredicted RBP-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 TSSK6Q9BXA6 273 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 ARL6Q9H0F7 186 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 SPASTQ9UBP0 616 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 COL4A5P29400 1685 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 WDR87Q6ZQQ6 2873 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 JMJD1CQ15652 2540 aa-2.96□□□□□ -2.88
RNU6-539P-201ENST00000516665 A0A0A6YYD5 115 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 MEIS3P1A6NDR6 274 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 RNASEK-C17orf49H0YIS7 233 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 H7C1H1 209 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 OR7A10O76100 309 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 TRBV12-3P01733 135 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 CRYGDP07320 174 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 TROVE2P10155 538 aaKnown RBP eCLIP-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 HMGB2P26583 209 aaKnown RBP-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 HSD17B2P37059 387 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 PPP1R8Q12972 351 aaKnown RBP-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 ECH1Q13011 328 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 SNX1Q13596 522 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 INAQ16352 499 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 TTMPQ5BVD1 217 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 PABPC1L2AQ5JQF8 200 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 GBP6Q6ZN66 633 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 LINC00696Q6ZRV3 163 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 CLDN19Q8N6F1 224 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 ZNF555Q8NEP9 628 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 C2orf15Q8WU43 125 aaKnown RBP-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 HAUS1Q96CS2 278 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 DTD2Q96FN9 168 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 RAB3IPQ96QF0 476 aaPredicted RBP-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 KCNK16Q96T55 309 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 HBEGFQ99075 208 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 SH3GL1Q99961 368 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 MICU1Q9BPX6 476 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 RRAGDQ9NQL2 400 aaPredicted RBP-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 NUP50Q9UKX7 468 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 COMMD10Q9Y6G5 202 aa-2.97□□□□□ -2.88
RNU6-539P-201ENST00000516665 WDR90Q96KV7 1748 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 XKRY2A2RUG3 117 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 A8MWP6 167 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 SDHDO14521 159 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 INE1O15225 51 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 HTR1DP28221 377 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 EVI2BP34910 448 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 PRSS3P35030 304 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 LPAR6P43657 344 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 AQP4P55087 323 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 CTBP2P56545 445 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 ACTR3P61158 418 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 MAPRE2Q15555 327 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 AARDQ4LEZ3 155 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 PRAMEF20Q5VT98 475 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 KDM4DQ6B0I6 523 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 OR10K2Q6IF99 312 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 SBSNQ6UWP8 590 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 VMO1Q7Z5L0 202 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 HOOK3Q86VS8 718 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 ANGPTL5Q86XS5 388 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 LEMD2Q8NC56 503 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 STXBP6Q8NFX7 210 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 OR11G2Q8NGC1 345 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 OR8A1Q8NGG7 326 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 CLCC1Q96S66 551 aa-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 RPUSD1Q9UJJ7 312 aaKnown RBP-2.98□□□□□ -2.89
RNU6-539P-201ENST00000516665 SPTBN4Q9H254 2564 aa-2.99□□□□□ -2.89
RNU6-539P-201ENST00000516665 IGHV3OR16-9A0A0B4J2B5 98 aa-2.99□□□□□ -2.89
RNU6-539P-201ENST00000516665 NUPR2A6NF83 97 aa-2.99□□□□□ -2.89
RNU6-539P-201ENST00000516665 H3BPC8 53 aa-2.99□□□□□ -2.89
RNU6-539P-201ENST00000516665 CA3P07451 260 aa-2.99□□□□□ -2.89
RNU6-539P-201ENST00000516665 GTF2F2P13984 249 aa-2.99□□□□□ -2.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms