RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 WNT9BO14905 357 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 RGS10O43665 173 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 ECDO95905 644 aaPredicted RBP6.73□□□□□ -1.33
USP40-216ENST00000485943 IGHA1P01876 353 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 LIPFP07098 398 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 GNAO1P09471 354 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 FAM157CP0CG43 387 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 TMEM225BP0DP42 221 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 PIPP12273 146 aaPredicted RBP6.73□□□□□ -1.33
USP40-216ENST00000485943 GABRB1P18505 474 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 ATF1P18846 271 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 AZGP1P25311 298 aaKnown RBP6.73□□□□□ -1.33
USP40-216ENST00000485943 THBS2P35442 1172 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 RANBP1P43487 201 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 TGM4P49221 684 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 ETV1P50549 477 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 SNU13P55769 128 aaKnown RBP6.73□□□□□ -1.33
USP40-216ENST00000485943 WNT4P56705 351 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 ISL1P61371 349 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 LMO4P61968 165 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 SPRNQ5BIV9 151 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 C6orf141Q5SZD1 244 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 GPR157Q5UAW9 335 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 WDR82Q6UXN9 313 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 FAM185AQ8N0U4 392 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 BATF2Q8N1L9 274 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 PRSS35Q8N3Z0 413 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 APH1BQ8WW43 257 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 TFAP2CQ92754 450 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 GGHQ92820 318 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 UFD1Q92890 307 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 SPSB1Q96BD6 273 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 CEP19Q96LK0 163 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 CCL13Q99616 98 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 PDCD1LG2Q9BQ51 273 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 NUDT16L1Q9BRJ7 211 aaKnown RBP6.73□□□□□ -1.33
USP40-216ENST00000485943 PCGF1Q9BSM1 259 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 ZCCHC4Q9H5U6 513 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 ISG20L2Q9H9L3 353 aaKnown RBP6.73□□□□□ -1.33
USP40-216ENST00000485943 TMEM165Q9HC07 324 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 SMURF1Q9HCE7 757 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 VCX3AQ9NNX9 186 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 BABAM2Q9NXR7 383 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 RASL12Q9NYN1 266 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 SLC25A10Q9UBX3 287 aaPredicted RBP6.73□□□□□ -1.33
USP40-216ENST00000485943 RAB26Q9ULW5 256 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 ZNF281Q9Y2X9 895 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 AKAP9Q99996 3911 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 MALRD1Q5VYJ5 2156 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 CSPG4Q6UVK1 2322 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 TRBV23-1A0A0A0MS06 115 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 FUOMA2VDF0 154 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 SRRM5B3KS81 715 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 DVL1O14640 695 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 SULT1B1O43704 296 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 WBP4O75554 376 aaKnown RBP6.72□□□□□ -1.33
USP40-216ENST00000485943 ISG15P05161 165 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 WNT2P09544 360 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 PRKACAP17612 351 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 CELP19835 753 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 CCL1P22362 96 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 GABRR1P24046 479 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 KIR3DL2P43630 455 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 BMXP51813 675 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 EDDM3BP56851 147 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 SCN1BQ07699 218 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 RIPK1Q13546 671 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 CDK5R1Q15078 307 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 RSU1Q15404 277 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 YIF1BQ5BJH7 314 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 RBM48Q5RL73 367 aaKnown RBP6.72□□□□□ -1.33
USP40-216ENST00000485943 WDR25Q64LD2 544 aaPredicted RBP6.72□□□□□ -1.33
USP40-216ENST00000485943 SLC25A26Q70HW3 274 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 GDPD3Q7L5L3 318 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 TRAPPC6BQ86SZ2 158 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 ANGPTL5Q86XS5 388 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 MFSD4AQ8N468 514 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 GCSAMQ8N6F7 178 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 ZFP41Q8N8Y5 198 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 OR5D18Q8NGL1 313 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 NEK7Q8TDX7 302 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 HPSE2Q8WWQ2 592 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 RAB40AQ8WXH6 277 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 AQP3Q92482 292 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 TMEM106AQ96A25 262 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 SLAMF9Q96A28 289 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 RFT1Q96AA3 541 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 SMIM19Q96E16 107 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 NR1H4Q96RI1 486 aaPredicted RBP6.72□□□□□ -1.33
USP40-216ENST00000485943 ZNF184Q99676 751 aaPredicted RBP6.72□□□□□ -1.33
USP40-216ENST00000485943 PKIBQ9C010 78 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 OR51I2Q9H344 312 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 TCF7L1Q9HCS4 588 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 MRPS18AQ9NVS2 196 aaKnown RBP6.72□□□□□ -1.33
USP40-216ENST00000485943 PAK1IP1Q9NWT1 392 aaPredicted RBP6.72□□□□□ -1.33
USP40-216ENST00000485943 PSORS1C1Q9UIG5 152 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 ING4Q9UNL4 249 aa6.72□□□□□ -1.33
USP40-216ENST00000485943 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.72□□□□□ -1.331e-32■■■■■ 44.2
USP40-216ENST00000485943 HIVEP1P15822 2718 aa6.71□□□□□ -1.33
USP40-216ENST00000485943 A0A096LNT2 108 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms