RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 NRIP2Q9BQI9 281 aa13.9□□□□□ -0.18
TRIM39-209ENST00000428728 PLEKHA1Q9HB21 404 aa13.9□□□□□ -0.18
TRIM39-209ENST00000428728 USE1Q9NZ43 259 aa13.9□□□□□ -0.18
TRIM39-209ENST00000428728 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.9□□□□□ -0.18
TRIM39-209ENST00000428728 SIGLEC9Q9Y336 463 aa13.9□□□□□ -0.18
TRIM39-209ENST00000428728 SNX5Q9Y5X3 404 aa13.9□□□□□ -0.18
TRIM39-209ENST00000428728 CMYA5Q8N3K9 4069 aa13.9□□□□□ -0.18
TRIM39-209ENST00000428728 ERVFRD-1P60508 538 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 TMEM200BQ69YZ2 307 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 KDM4DQ6B0I6 523 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 HIST2H2BDQ6DRA6 164 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 ANGPTL5Q86XS5 388 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 C1QL4Q86Z23 238 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 CALHM1Q8IU99 346 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 ASCC1Q8N9N2 400 aaKnown RBP13.89□□□□□ -0.19
TRIM39-209ENST00000428728 OR4C13Q8NGP0 309 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 AJUBAQ96IF1 538 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 FAM234AQ9H0X4 552 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 HEXA-AS1Q9H8Q6 139 aa13.89□□□□□ -0.19
TRIM39-209ENST00000428728 FAM230AA0A1W2PPH8 454 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 MEX3AA1L020 520 aaKnown RBP13.88□□□□□ -0.19
TRIM39-209ENST00000428728 NOS1APO75052 506 aaPredicted RBP13.88□□□□□ -0.19
TRIM39-209ENST00000428728 TK1P04183 234 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 KRT8P05787 483 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 EFNB1P98172 346 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 PLA1AQ53H76 456 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 AMIGO2Q86SJ2 522 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 PPP1R35Q8TAP8 253 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 HES4Q9HCC6 221 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 FBLN5Q9UBX5 448 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 VWFP04275 2813 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 PLXNB1O43157 2135 aa13.88□□□□□ -0.19
TRIM39-209ENST00000428728 hCG_1809904A0A1W2PP81 198 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 A0A1W2PPE2 198 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 A0A1W2PR64 198 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 A0A1W2PRV1 198 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 DHRS7CA6NNS2 312 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 INMTO95050 263 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 CSF1P09603 554 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 MPZP25189 248 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 FASP25445 335 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 LGALS4P56470 323 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 COL10A1Q03692 680 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 Q6ZTK2 550 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 ZDHHC13Q8IUH4 622 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 C11orf42Q8N5U0 333 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 C11orf44Q8N8P7 122 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 OR10H4Q8NGA5 316 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 CIB1Q99828 191 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 GABARAPL1Q9H0R8 117 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 MEGF9Q9H1U4 602 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 FOXJ3Q9UPW0 622 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 SLC7A11Q9UPY5 501 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 NOTCH1P46531 2555 aa13.87□□□□□ -0.19
TRIM39-209ENST00000428728 A0A1W2PQL4 384 aaPredicted RBP13.86□□□□□ -0.19
TRIM39-209ENST00000428728 DYNC1I1O14576 645 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 SYT7O43581 403 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 CHST1O43916 411 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 CCL1P22362 96 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 EFNB2P52799 333 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 EDDM3BP56851 147 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 IL24Q13007 206 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 HERPUD1Q15011 391 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 Q6ZSR3 168 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 LHFPL4Q7Z7J7 247 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 CATSPERDQ86XM0 798 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 OR2T6Q8NHC8 308 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 SLAMF9Q96A28 289 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 NKX3-1Q99801 234 aaPredicted RBP13.86□□□□□ -0.19
TRIM39-209ENST00000428728 PKIBQ9C010 78 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 RIBC2Q9H4K1 309 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 WARS2Q9UGM6 360 aaKnown RBP13.86□□□□□ -0.19
TRIM39-209ENST00000428728 ENOPH1Q9UHY7 261 aa13.86□□□□□ -0.19
TRIM39-209ENST00000428728 IGKV1-27A0A075B6S5 117 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 F8VVB4 439 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 F8VWA3 439 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 ERVK11-1P61568 191 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 UBE2V2Q15819 145 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 C1orf146Q5VVC0 180 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 CRIP3Q6Q6R5 217 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 KLHDC1Q8N7A1 406 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 CEP19Q96LK0 163 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 RANBP3Q9H6Z4 567 aaPredicted RBP13.85□□□□□ -0.19
TRIM39-209ENST00000428728 RAB18Q9NP72 206 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 AP4S1Q9Y587 144 aa13.85□□□□□ -0.19
TRIM39-209ENST00000428728 METTL15A6NJ78 407 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 K7N7A8 449 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 ARG1P05089 322 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 OR2T7P0C7T2 308 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 VSIG10L2P0DP72 767 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 HTR1FP30939 366 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 ATP6V1E1P36543 226 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 POLR2IP36954 125 aaKnown RBP13.84□□□□□ -0.19
TRIM39-209ENST00000428728 DLX6P56179 175 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 BNIP1Q12981 228 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 EDDM3AQ14507 147 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 AANATQ16613 207 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 GDPD3Q7L5L3 318 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 FAM220AQ7Z4H9 259 aa13.84□□□□□ -0.19
TRIM39-209ENST00000428728 DYNAPQ8N1N2 210 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms