RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 NPIPB13A6NJU9 1138 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 FIGNL2A6NMB9 653 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 NPIPB4C9JG80 1138 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 DHHO43323 396 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 CST4P01036 141 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 ZNF728P0DKX0 622 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 B4GALT1P15291 398 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 ENDOGQ14249 297 aaKnown RBP10.59□□□□□ -0.71
CLIP3-201ENST00000360535 PLXDC2Q6UX71 529 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 RBMS3Q6XE24 437 aaKnown RBP10.59□□□□□ -0.71
CLIP3-201ENST00000360535 RABEPKQ7Z6M1 372 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 YRDCQ86U90 279 aaKnown RBP10.59□□□□□ -0.71
CLIP3-201ENST00000360535 PPP1R3BQ86XI6 285 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 SGK3Q96BR1 496 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 FBLN5Q9UBX5 448 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 ANXA10Q9UJ72 324 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 OR2B8PP59922 312 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 RSPO1Q2MKA7 263 aaPredicted RBP10.59□□□□□ -0.71
CLIP3-201ENST00000360535 RPUSD3Q6P087 351 aaKnown RBP10.59□□□□□ -0.71
CLIP3-201ENST00000360535 CRIP3Q6Q6R5 217 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 OR52M1Q8NGK5 317 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 SFT2D1Q8WV19 159 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 PIGCQ92535 297 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 HAS2Q92819 552 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 MR1Q95460 341 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 SLAMF9Q96A28 289 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 MARS2Q96GW9 593 aaKnown RBP10.59□□□□□ -0.71
CLIP3-201ENST00000360535 SMIM8Q96KF7 97 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 NAA11Q9BSU3 229 aaPredicted RBP10.59□□□□□ -0.71
CLIP3-201ENST00000360535 CEP192Q8TEP8 1941 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 A6NLC8 198 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 SERPINE3A8MV23 424 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 PHF1O43189 567 aaPredicted RBP10.59□□□□□ -0.71
CLIP3-201ENST00000360535 MBPP02686 304 aaPredicted RBP10.59□□□□□ -0.71
CLIP3-201ENST00000360535 FAM189A2Q15884 450 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 SPIN3Q5JUX0 258 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 FBXL14Q8N1E6 418 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 BORCS8Q96FH0 119 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 CCDC74BQ96LY2 380 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 PTRH2Q9Y3E5 179 aaKnown RBP10.59□□□□□ -0.71
CLIP3-201ENST00000360535 ZDBF2Q9HCK1 2354 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 hCG_1809904A0A1W2PP81 198 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 A0A1W2PR64 198 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 A0A1W2PRV1 198 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 TP53I11O14683 189 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 PRF1P14222 555 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 HOXA1P49639 335 aaPredicted RBP10.58□□□□□ -0.72
CLIP3-201ENST00000360535 SULT1A2P50226 295 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 ADAM5Q6NVV9 412 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 WDR74Q6RFH5 385 aaPredicted RBP10.58□□□□□ -0.72
CLIP3-201ENST00000360535 FBXW12Q6X9E4 464 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 FAM89BQ8N5H3 189 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 TGIF2Q9GZN2 237 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 MAGT1Q9H0U3 335 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 METTL9Q9H1A3 318 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 ZNF442Q9H7R0 627 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 CRLF2Q9HC73 371 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 DNAJB11Q9UBS4 358 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 MTCH2Q9Y6C9 303 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 COL6A3P12111 3177 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 PRSS44E7EML9 344 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 TNFSF12O43508 249 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 ZNF44P15621 663 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 THBS4P35443 961 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 FAM180AQ6UWF9 173 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 TMEM182Q6ZP80 229 aaPredicted RBP10.58□□□□□ -0.72
CLIP3-201ENST00000360535 CADM4Q8NFZ8 388 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 FAM213BQ8TBF2 198 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 SPTSSAQ969W0 71 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 SAT2Q96F10 170 aaPredicted RBP10.58□□□□□ -0.72
CLIP3-201ENST00000360535 CHST5Q9GZS9 411 aa10.58□□□□□ -0.72
CLIP3-201ENST00000360535 IGHV5-10-1A0A0J9YXX1 117 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 A0A1W2PPH5 198 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 DEDDO75618 318 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 EIF3GO75821 320 aaKnown RBP eCLIP10.57□□□□□ -0.72
CLIP3-201ENST00000360535 TRAPPC6AO75865 159 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 JTBO76095 146 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 OR7C1O76099 320 aaPredicted RBP10.57□□□□□ -0.72
CLIP3-201ENST00000360535 ZNF14P17017 642 aaPredicted RBP10.57□□□□□ -0.72
CLIP3-201ENST00000360535 RAB5BP61020 215 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 AWAT1Q58HT5 328 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 KIAA2026Q5HYC2 2103 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 CHRDQ9H2X0 955 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 SMCO4Q9NRQ5 59 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 P4HTMQ9NXG6 502 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 HDGFL3Q9Y3E1 203 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 PUS1Q9Y606 427 aaKnown RBP eCLIP10.57□□□□□ -0.72
CLIP3-201ENST00000360535 CHCHD2Q9Y6H1 151 aaPredicted RBP10.57□□□□□ -0.72
CLIP3-201ENST00000360535 C1orf196B1AJZ1 125 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 GPR37O15354 613 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 TXNL1O43396 289 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 SGCEO43556 437 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 ONECUT2O95948 504 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 HTR5AP47898 357 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 MEOX2P50222 304 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 ZNF84P51523 738 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 SHBQ15464 509 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 FAM24BQ8N5W8 94 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 LINC00469Q8N7U9 141 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 NUDT16L1Q9BRJ7 211 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms