RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 ASCL5Q7RTU5 278 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 OR1N1Q8NGS0 311 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 COA4Q9NYJ1 87 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 SLAMF8Q9P0V8 285 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 HOXD13P35453 343 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 SNRPNP63162 240 aaKnown RBP15.89■□□□□ 0.13
SMAD4-201ENST00000342988 OR2Z1Q8NG97 314 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 OR5C1Q8NGR4 320 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 OIT3Q8WWZ8 545 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 ZNF646O15015 1829 aaPredicted RBP15.89■□□□□ 0.13
SMAD4-201ENST00000342988 ZNF253O75346 499 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 CEACAM6P40199 344 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 MARCH1Q8TCQ1 289 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 UBTD2Q8WUN7 234 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 SIT1Q9Y3P8 196 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 A0A0B4J293 547 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 SCMH1Q96GD3 660 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 PDLIM5Q96HC4 596 aaKnown RBP15.89■□□□□ 0.13
SMAD4-201ENST00000342988 PKDREJQ9NTG1 2253 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 IFITM5A6NNB3 132 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 FAM72CH0Y354 149 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 CA3P07451 260 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 IQCF3P0C7M6 154 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 FAM72AQ5TYM5 149 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 FAM72DQ6L9T8 149 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 FAM72BQ86X60 149 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 DEFB108BQ8NET1 73 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 ZNF778Q96MU6 729 aa15.89■□□□□ 0.13
SMAD4-201ENST00000342988 SLC19A1P41440 591 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 GLIS1Q8NBF1 620 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 OR4D9Q8NGE8 314 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 TNFSF11O14788 317 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 GBGT1Q8N5D6 347 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 PTX4Q96A99 478 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 VSIG4Q9Y279 399 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 MASP2O00187 686 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 FPR2P25090 351 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 MFAP4P55083 255 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 MAP6Q96JE9 813 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 ALKBH7Q9BT30 221 aaPredicted RBP15.88■□□□□ 0.13
SMAD4-201ENST00000342988 CST7O76096 145 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 IGHV3-9P01782 118 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 SEMG1P04279 462 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 CTU1Q7Z7A3 348 aaKnown RBP15.88■□□□□ 0.13
SMAD4-201ENST00000342988 IGHA1P01876 353 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 IGHA2P01877 340 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 RNF224P0DH78 156 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 ARF6P62330 175 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 ATOH1Q92858 354 aaPredicted RBP15.88■□□□□ 0.13
SMAD4-201ENST00000342988 C20orf141Q9NUB4 165 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 LAMB2P55268 1798 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 C11orf94C9JXX5 98 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 GNG7O60262 68 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 CTNSO60931 367 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 PRSS2P07478 247 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 OR5AC1P0C628 307 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 CCL14Q16627 93 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 GLI4P10075 376 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 BATF2Q8N1L9 274 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 OR4C13Q8NGP0 309 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 SLC17A5Q9NRA2 495 aa15.88■□□□□ 0.13
SMAD4-201ENST00000342988 TIAL1Q01085 375 aaKnown RBP eCLIP15.87■□□□□ 0.136e-7■□□□□ 9.5
SMAD4-201ENST00000342988 MARCH3Q86UD3 253 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 SNX22Q96L94 193 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 CA10Q9NS85 328 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 OR6C3Q9NZP0 311 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 LPAR3Q9UBY5 353 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 IL4P05112 153 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 EPXP11678 715 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 BSXQ3C1V8 233 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 OR4S2Q8NH73 311 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 WDR89Q96FK6 387 aaPredicted RBP15.87■□□□□ 0.13
SMAD4-201ENST00000342988 PPIL1Q9Y3C6 166 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 SLC25A20O43772 301 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 PNLIPRP2P54317 469 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 IGSF11Q5DX21 431 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 ROBO4Q8WZ75 1007 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 PBOV1Q9GZY1 135 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 HDGFL3Q9Y3E1 203 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 MKRN2OSH3BPM6 223 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 ACER3Q9NUN7 267 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 RASL12Q9NYN1 266 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 LNP1A1A4G5 178 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 IVDP26440 423 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 EVX2Q03828 476 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 SMN1Q16637 294 aaKnown RBP15.87■□□□□ 0.13
SMAD4-201ENST00000342988 PMCHL2Q9BQD1 86 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 ALPK2Q86TB3 2170 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 TRAV1-2A0A0B4J238 106 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 ZNF121P58317 390 aaPredicted RBP15.87■□□□□ 0.13
SMAD4-201ENST00000342988 SYT14P1Q58G82 188 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 SLC25A26Q70HW3 274 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 SORT1Q99523 831 aa15.87■□□□□ 0.13
SMAD4-201ENST00000342988 LRRTM3Q86VH5 581 aa15.86■□□□□ 0.13
SMAD4-201ENST00000342988 ZCCHC14Q8WYQ9 949 aaKnown RBP15.86■□□□□ 0.13
SMAD4-201ENST00000342988 C2orf88Q9BSF0 95 aa15.86■□□□□ 0.13
SMAD4-201ENST00000342988 CXorf1O96002 111 aa15.86■□□□□ 0.13
SMAD4-201ENST00000342988 DUSP18Q8NEJ0 188 aa15.86■□□□□ 0.13
SMAD4-201ENST00000342988 RSRP1Q9BUV0 290 aa15.86■□□□□ 0.13
SMAD4-201ENST00000342988 C1QTNF6Q9BXI9 259 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms