RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 C1orf174Q8IYL3 243 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 ZNF485Q8NCK3 441 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 OR4M2Q8NGB6 313 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 H1FXQ92522 213 aaKnown RBP4.7□□□□□ -1.66
CPNE3-208ENST00000614678 TFAP2CQ92754 450 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 KCNK15Q9H427 330 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 TMEM14AQ9Y6G1 99 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 TRAV39A0A0B4J263 110 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 IGHV2-70DA0A0C4DH43 119 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 ANXA2P2A6NMY6 339 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 HSPB6O14558 160 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 CASQ2O14958 399 aaPredicted RBP4.7□□□□□ -1.66
CPNE3-208ENST00000614678 IRF2P14316 349 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 MMP9P14780 707 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 HOXB6P17509 224 aaKnown RBP4.7□□□□□ -1.66
CPNE3-208ENST00000614678 BCL3P20749 454 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 PAX8Q06710 450 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 SLC3A1Q07837 685 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 ST3GAL4Q11206 333 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 SLC25A30Q5SVS4 291 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 LDLRAD2Q5SZI1 272 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 SIGLECL1Q8N7X8 197 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 ZDHHC22Q8N966 263 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 RAB39BQ96DA2 213 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 NEIL1Q96FI4 390 aaPredicted RBP4.7□□□□□ -1.66
CPNE3-208ENST00000614678 NUDT16L1Q9BRJ7 211 aaKnown RBP4.7□□□□□ -1.66
CPNE3-208ENST00000614678 ZNF222Q9UK12 451 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 AUP1Q9Y679 476 aa4.7□□□□□ -1.66
CPNE3-208ENST00000614678 MEGF11A6BM72 1044 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 LRRC30A6NM36 301 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 PSPNO60542 156 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 ZNF254O75437 659 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 MMP23AO75900 390 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 FSHBP01225 129 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 IGHV3-7P01780 117 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 ZNF12P17014 697 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 CCL1P22362 96 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 TUBG1P23258 451 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 RPS11P62280 158 aaKnown RBP eCLIP4.69□□□□□ -1.66
CPNE3-208ENST00000614678 ZNF273Q14593 569 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 MICBQ29980 383 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 TEX36Q5VZQ5 186 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 DCDC5Q6ZRR9 648 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 DHRSXQ8N5I4 330 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 SPICQ8N5J4 248 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 CELF2-AS1Q8N7Q2 184 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 OR52N4Q8NGI2 321 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 TRUB1Q8WWH5 349 aaKnown RBP4.69□□□□□ -1.66
CPNE3-208ENST00000614678 RAB40AQ8WXH6 277 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 LHX4Q969G2 390 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 C19orf24Q9BVV8 132 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 RTL8AQ9BWD3 113 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 TUBG2Q9NRH3 451 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 TRAV8-7A0A075B6U6 113 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 NDUFB7P17568 137 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 DDOSTP39656 456 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 GP2P55259 537 aaKnown RBP4.69□□□□□ -1.66
CPNE3-208ENST00000614678 SLC34A1Q06495 639 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 ALKBH1Q13686 389 aaKnown RBP4.69□□□□□ -1.66
CPNE3-208ENST00000614678 ZNF181Q2M3W8 571 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 ZNF782Q6ZMW2 699 aaPredicted RBP4.69□□□□□ -1.66
CPNE3-208ENST00000614678 TCF23Q7RTU1 214 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 MUC20Q8N307 709 aaPredicted RBP4.69□□□□□ -1.66
CPNE3-208ENST00000614678 C11orf42Q8N5U0 333 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 DNAAF1Q8NEP3 725 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 OR8B3Q8NGG8 313 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 RFKQ969G6 155 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 OR8B2Q96RD0 313 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 PRRG3Q9BZD7 231 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 TAS2R4Q9NYW5 299 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 TRAV20A0A0B4J274 112 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 CENPVL3A0A0U1RRI6 287 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 CDRT1O95170 752 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 HTR1AP08908 422 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 CAPGP40121 348 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 MAP2K4P45985 399 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 DEFB112Q30KQ8 113 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 CLVS2Q5SYC1 327 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 ACP7Q6ZNF0 438 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 ZNF555Q8NEP9 628 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 CSNK2A3Q8NEV1 391 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 TMEM185AQ8NFB2 350 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 OR11L1Q8NGX0 322 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 UBALD1Q8TB05 177 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 MICU1Q9BPX6 476 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 RNPEPL1Q9HAU8 725 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 NLKQ9UBE8 527 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 ENPP5Q9UJA9 477 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 MPC1Q9Y5U8 109 aa4.69□□□□□ -1.66
CPNE3-208ENST00000614678 KIR2DS1A0A191URI9 304 aa4.68□□□□□ -1.66
CPNE3-208ENST00000614678 A0A1B0GVI7 797 aa4.68□□□□□ -1.66
CPNE3-208ENST00000614678 RNASEK-C17orf49H0YIS7 233 aa4.68□□□□□ -1.66
CPNE3-208ENST00000614678 SULT1C4O75897 302 aa4.68□□□□□ -1.66
CPNE3-208ENST00000614678 GNG3P63215 75 aa4.68□□□□□ -1.66
CPNE3-208ENST00000614678 ZNF788Q6ZQV5 615 aa4.68□□□□□ -1.66
CPNE3-208ENST00000614678 ZNF676Q8N7Q3 588 aa4.68□□□□□ -1.66
CPNE3-208ENST00000614678 OR13C3Q8NGS6 347 aa4.68□□□□□ -1.66
CPNE3-208ENST00000614678 PGLYRP3Q96LB9 341 aa4.68□□□□□ -1.66
CPNE3-208ENST00000614678 RGCCQ9H4X1 137 aa4.68□□□□□ -1.66
CPNE3-208ENST00000614678 PLEKHA1Q9HB21 404 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms