RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 RHBDD3Q9Y3P4 386 aa10.74□□□□□ -0.69
UPF1-208ENST00000600012 SPEF1Q9Y4P9 236 aa10.74□□□□□ -0.69
UPF1-208ENST00000600012 ANK2Q01484 3957 aa10.74□□□□□ -0.69
UPF1-208ENST00000600012 SVEP1Q4LDE5 3571 aa10.74□□□□□ -0.69
UPF1-208ENST00000600012 IFITM5A6NNB3 132 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 AIPO00170 330 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 TCF21O43680 179 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 GMDSO60547 372 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 NRASP01111 189 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 SNRPBP14678 240 aaKnown RBP10.73□□□□□ -0.69
UPF1-208ENST00000600012 RAC2P15153 192 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 PSG7Q13046 419 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 PRDX4Q13162 271 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 ZNF718Q3SXZ3 478 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 GLT8D1Q68CQ7 371 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 RGS7BPQ6MZT1 257 aaPredicted RBP10.73□□□□□ -0.69
UPF1-208ENST00000600012 CROCCP3Q8IVE0 287 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 NKAIN3Q8N8D7 197 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 LINC01356Q8N9X3 169 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 CSNK2A3Q8NEV1 391 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 AP3S1Q92572 193 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 RFT1Q96AA3 541 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 KCNK15Q9H427 330 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 TMEM138Q9NPI0 162 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 COMMD3Q9UBI1 195 aa10.73□□□□□ -0.69
UPF1-208ENST00000600012 A0A075B6Q4 140 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 MEGF11A6BM72 1044 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 IQCF6A8MYZ5 107 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 CTDSP2O14595 271 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 PAHP00439 452 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 CST4P01036 141 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 GCH1P30793 250 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 GLRXP35754 106 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 SRP14P37108 136 aaKnown RBP10.72□□□□□ -0.69
UPF1-208ENST00000600012 PSMD7P51665 324 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 BMXP51813 675 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 LSAMPQ13449 338 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 P2RY14Q15391 338 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 CNN3Q15417 329 aaKnown RBP10.72□□□□□ -0.69
UPF1-208ENST00000600012 RAB11BQ15907 218 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 LYPD6Q86Y78 171 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 OR6Q1Q8NGQ2 317 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 OR5H6Q8NGV6 325 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 LGALS14Q8TCE9 139 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 HAVCR1Q96D42 359 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 FGF23Q9GZV9 251 aaPredicted RBP10.72□□□□□ -0.69
UPF1-208ENST00000600012 MMP27Q9H306 513 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 METTL17Q9H7H0 456 aaPredicted RBP10.72□□□□□ -0.69
UPF1-208ENST00000600012 PURGQ9UJV8 347 aaKnown RBP10.72□□□□□ -0.69
UPF1-208ENST00000600012 A3GALT2U3KPV4 340 aa10.72□□□□□ -0.69
UPF1-208ENST00000600012 FAM230AA0A1W2PPH8 454 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 ANKRD30BLA7E2S9 258 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 SLC17A2O00624 439 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 MAGEB3O15480 346 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 RGS5O15539 181 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 TIMM8AO60220 97 aaPredicted RBP10.71□□□□□ -0.69
UPF1-208ENST00000600012 HPGDSO60760 199 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 ALDOBP05062 364 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 SELEP16581 610 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 KITLGP21583 273 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 TUBG1P23258 451 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 CA6P23280 308 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 IL2RGP31785 369 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 ZNF93P35789 620 aaPredicted RBP10.71□□□□□ -0.69
UPF1-208ENST00000600012 OR3A4PP47883 348 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 RPS23P62266 143 aaKnown RBP10.71□□□□□ -0.69
UPF1-208ENST00000600012 RIN1Q13671 783 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 C1orf100Q5SVJ3 147 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 MBNL2Q5VZF2 373 aaKnown RBP10.71□□□□□ -0.69
UPF1-208ENST00000600012 CRIP3Q6Q6R5 217 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 LRP11Q86VZ4 500 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 LAX1Q8IWV1 398 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 ZDHHC23Q8IYP9 409 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 ZCCHC24Q8N2G6 241 aaKnown RBP10.71□□□□□ -0.69
UPF1-208ENST00000600012 OR4D6Q8NGJ1 314 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 OR5D18Q8NGL1 313 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 OR6M1Q8NGM8 313 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 ZNF671Q8TAW3 534 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 HPSE2Q8WWQ2 592 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 SPSB1Q96BD6 273 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 KCTD12Q96CX2 325 aaKnown RBP10.71□□□□□ -0.69
UPF1-208ENST00000600012 GPER1Q99527 375 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 SYT3Q9BQG1 590 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 MIXL1Q9H2W2 232 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 CNTD2Q9H8S5 307 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 LIN7BQ9HAP6 207 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 ABCB9Q9NP78 766 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 TUBG2Q9NRH3 451 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 STEAP1Q9UHE8 339 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 CMAHPQ9Y471 501 aa10.71□□□□□ -0.69
UPF1-208ENST00000600012 IGKV1-27A0A075B6S5 117 aa10.7□□□□□ -0.7
UPF1-208ENST00000600012 ALX3O95076 343 aa10.7□□□□□ -0.7
UPF1-208ENST00000600012 CD37P11049 281 aa10.7□□□□□ -0.7
UPF1-208ENST00000600012 PRKACBP22694 351 aa10.7□□□□□ -0.7
UPF1-208ENST00000600012 HTR2CP28335 458 aa10.7□□□□□ -0.7
UPF1-208ENST00000600012 MMP15P51511 669 aa10.7□□□□□ -0.7
UPF1-208ENST00000600012 DVL1P1P54792 670 aaPredicted RBP10.7□□□□□ -0.7
UPF1-208ENST00000600012 MZT2AQ6P582 158 aa10.7□□□□□ -0.7
UPF1-208ENST00000600012 KRT74Q7RTS7 529 aa10.7□□□□□ -0.7
UPF1-208ENST00000600012 C1orf174Q8IYL3 243 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms