RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 IGHV4-38-2P0DP08 117 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 MMP9P14780 707 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 ZNF19P17023 458 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 PEX2P28328 305 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 CCR9P51686 369 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 IKZF1Q13422 519 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 KLHL22Q53GT1 634 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 GPR157Q5UAW9 335 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 METTL11BQ5VVY1 283 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 RBMS3Q6XE24 437 aaKnown RBP13.41□□□□□ -0.26
TRIM28-206ENST00000595974 WDFY2Q96P53 400 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 AMBNQ9NP70 447 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 ERVK13-1Q9NX77 482 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 FRRS1LQ9P0K9 344 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 MYRFQ9Y2G1 1151 aa13.41□□□□□ -0.26
TRIM28-206ENST00000595974 IGKV1D-17A0A075B6S4 117 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 SYNGR1O43759 233 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 WBP4O75554 376 aaKnown RBP13.4□□□□□ -0.26
TRIM28-206ENST00000595974 TOX4O94842 621 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 SERPINA3P01011 423 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 ACAA1P09110 424 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-206ENST00000595974 PSG2P11465 335 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 SELLP14151 372 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 CAV3P56539 151 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 BPIFB3P59826 476 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 NANOS3P60323 173 aaKnown RBP13.4□□□□□ -0.26
TRIM28-206ENST00000595974 MRPL28Q13084 256 aaKnown RBP13.4□□□□□ -0.26
TRIM28-206ENST00000595974 CNN3Q15417 329 aaKnown RBP13.4□□□□□ -0.26
TRIM28-206ENST00000595974 ZNF691Q5VV52 312 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 TTC23Q5W5X9 447 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 ACP7Q6ZNF0 438 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 LHFPL3Q86UP9 236 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 FGFRL1Q8N441 504 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 LY6G5BQ8NDX9 201 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 SETD9Q8NE22 299 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 OR52I1Q8NGK6 324 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 C8orf46Q8TAG6 207 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 TRMT10AQ8TBZ6 339 aaKnown RBP13.4□□□□□ -0.26
TRIM28-206ENST00000595974 HAVCR2Q8TDQ0 301 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 CYGBQ8WWM9 190 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 PCGF1Q9BSM1 259 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 PKIBQ9C010 78 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 SIRPDQ9H106 197 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 SLC25A10Q9UBX3 287 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-206ENST00000595974 ZNF222Q9UK12 451 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 KPTNQ9Y664 436 aa13.4□□□□□ -0.26
TRIM28-206ENST00000595974 IGHV3OR16-10A0A075B7F0 116 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 CASQ2O14958 399 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-206ENST00000595974 SFTPBP07988 381 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 RPSAP08865 295 aaKnown RBP13.39□□□□□ -0.27
TRIM28-206ENST00000595974 GABRA2P47869 451 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 FUT6P51993 359 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 IL24Q13007 206 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 ALKBH1Q13686 389 aaKnown RBP13.39□□□□□ -0.27
TRIM28-206ENST00000595974 PDCD1Q15116 288 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 UBE2V2Q15819 145 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 DGUOKQ16854 277 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 RDH10Q8IZV5 341 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 BCL6BQ8N143 479 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-206ENST00000595974 KIR3DL3Q8N743 410 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 SIGLECL1Q8N7X8 197 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-206ENST00000595974 NPRL2Q8WTW4 380 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 FAM216AQ8WUB2 273 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 TBX15Q96SF7 602 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 NRIP2Q9BQI9 281 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 ZNF649Q9BS31 505 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 DCTN5Q9BTE1 182 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 JAM3Q9BX67 310 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 CNTD2Q9H8S5 307 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 ZMAT3Q9HA38 289 aaKnown RBP13.39□□□□□ -0.27
TRIM28-206ENST00000595974 ESM1Q9NQ30 184 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 HHLA2Q9UM44 414 aa13.39□□□□□ -0.27
TRIM28-206ENST00000595974 DSCAML1Q8TD84 2053 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 FAM230AA0A1W2PPH8 454 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 IRGMA1A4Y4 181 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 OR4C45A6NMZ5 311 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 NXPH2O95156 264 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 ZNF20P17024 532 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 IL18R1Q13478 541 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 SMN1Q16637 294 aaKnown RBP13.38□□□□□ -0.27
TRIM28-206ENST00000595974 OGFRL1Q5TC84 451 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-206ENST00000595974 UTS2BQ765I0 119 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 CALHM1Q8IU99 346 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 CMTM4Q8IZR5 234 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 DHRSXQ8N5I4 330 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 ZNF676Q8N7Q3 588 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 ZDHHC22Q8N966 263 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 DNAAF1Q8NEP3 725 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 H1FXQ92522 213 aaKnown RBP13.38□□□□□ -0.27
TRIM28-206ENST00000595974 ADAT3Q96EY9 351 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-206ENST00000595974 BORCS8Q96FH0 119 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 SDSLQ96GA7 329 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 ZNF488Q96MN9 340 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 ISG20L2Q9H9L3 353 aaKnown RBP13.38□□□□□ -0.27
TRIM28-206ENST00000595974 HES4Q9HCC6 221 aa13.38□□□□□ -0.27
TRIM28-206ENST00000595974 FGF20Q9NP95 211 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-206ENST00000595974 TMEM212A6NML5 194 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 ANKRD65E5RJM6 399 aa13.37□□□□□ -0.27
TRIM28-206ENST00000595974 CLIC3O95833 236 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms