RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 NSUN5P2Q63ZY6 315 aa8.78□□□□□ -1
VPS53-220ENST00000576149 C6orf201Q7Z4U5 140 aa8.78□□□□□ -1
VPS53-220ENST00000576149 INO80EQ8NBZ0 244 aaPredicted RBP8.78□□□□□ -1
VPS53-220ENST00000576149 RELL2Q8NC24 303 aaPredicted RBP8.78□□□□□ -1
VPS53-220ENST00000576149 AKR7LQ8NHP1 331 aa8.78□□□□□ -1
VPS53-220ENST00000576149 MAFIPQ8WZ33 124 aa8.78□□□□□ -1
VPS53-220ENST00000576149 LINC00052Q96N35 136 aa8.78□□□□□ -1
VPS53-220ENST00000576149 NECAB3Q96P71 396 aaPredicted RBP8.78□□□□□ -1
VPS53-220ENST00000576149 FOXB1Q99853 325 aa8.78□□□□□ -1
VPS53-220ENST00000576149 DDA1Q9BW61 102 aa8.78□□□□□ -1
VPS53-220ENST00000576149 PPA2Q9H2U2 334 aa8.78□□□□□ -1
VPS53-220ENST00000576149 CHMP1AQ9HD42 196 aaPredicted RBP8.78□□□□□ -1
VPS53-220ENST00000576149 RASL12Q9NYN1 266 aa8.78□□□□□ -1
VPS53-220ENST00000576149 EHFQ9NZC4 300 aa8.78□□□□□ -1
VPS53-220ENST00000576149 TIMM10BQ9Y5J6 103 aa8.78□□□□□ -1
VPS53-220ENST00000576149 NCKAP5O14513 1909 aa8.78□□□□□ -1
VPS53-220ENST00000576149 IGKV1-27A0A075B6S5 117 aa8.78□□□□□ -1
VPS53-220ENST00000576149 FIGNL2A6NMB9 653 aa8.78□□□□□ -1
VPS53-220ENST00000576149 PI3P19957 117 aa8.78□□□□□ -1
VPS53-220ENST00000576149 MPLP40238 635 aa8.78□□□□□ -1
VPS53-220ENST00000576149 HTR5AP47898 357 aa8.78□□□□□ -1
VPS53-220ENST00000576149 LUMP51884 338 aaPredicted RBP8.78□□□□□ -1
VPS53-220ENST00000576149 POLR2GP62487 172 aaKnown RBP eCLIP8.78□□□□□ -1
VPS53-220ENST00000576149 BAMBIQ13145 260 aa8.78□□□□□ -1
VPS53-220ENST00000576149 CNN3Q15417 329 aaKnown RBP8.78□□□□□ -1
VPS53-220ENST00000576149 CEACAM16Q2WEN9 425 aa8.78□□□□□ -1
VPS53-220ENST00000576149 HSD17B13Q7Z5P4 300 aaPredicted RBP8.78□□□□□ -1
VPS53-220ENST00000576149 EIF4E3Q8N5X7 224 aaKnown RBP8.78□□□□□ -1
VPS53-220ENST00000576149 CPNE4Q96A23 557 aaPredicted RBP8.78□□□□□ -1
VPS53-220ENST00000576149 CPNE2Q96FN4 548 aaPredicted RBP8.78□□□□□ -1
VPS53-220ENST00000576149 CDC6Q99741 560 aa8.78□□□□□ -1
VPS53-220ENST00000576149 METTL9Q9H1A3 318 aa8.78□□□□□ -1
VPS53-220ENST00000576149 GPR35Q9HC97 309 aa8.78□□□□□ -1
VPS53-220ENST00000576149 RAB18Q9NP72 206 aa8.78□□□□□ -1
VPS53-220ENST00000576149 MCTS1Q9ULC4 181 aaKnown RBP8.78□□□□□ -1
VPS53-220ENST00000576149 TRBV6-7A0A0A0MS04 114 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 C9orf172C9J069 976 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 KRBOX1C9JBD0 128 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 CDK2AP1O14519 115 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 ST8SIA5O15466 376 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 HTR3BO95264 441 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 F10P00742 488 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 JMJD7P0C870 316 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 GABRR1P24046 479 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 PCBD1P61457 104 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 SURF2Q15527 256 aaPredicted RBP8.77□□□□□ -1.01
VPS53-220ENST00000576149 SLC9A3R2Q15599 337 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 ZNF124Q15973 351 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 Q3ZCU0 254 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 CHRFAM7AQ494W8 412 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 CCDC157Q569K6 752 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 TMEM42Q69YG0 159 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 SPINK14Q6IE38 97 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 WDR73Q6P4I2 378 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 PLXDC2Q6UX71 529 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 ASCL4Q6XD76 172 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 BVESQ8NE79 360 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 PXT1Q8NFP0 134 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 FGFBP3Q8TAT2 258 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 ABHD3Q8WU67 409 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 PHYHIPLQ96FC7 376 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 THOC3Q96J01 351 aaKnown RBP8.77□□□□□ -1.01
VPS53-220ENST00000576149 RNF126Q9BV68 326 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 ZNF471Q9BX82 626 aaPredicted RBP8.77□□□□□ -1.01
VPS53-220ENST00000576149 OR2H1Q9GZK4 316 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 ARRDC1-AS1Q9H2J1 176 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 PLEKHJ1Q9NW61 149 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 LRFN1Q9P244 771 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 ZNF391Q9UJN7 358 aa8.77□□□□□ -1.01
VPS53-220ENST00000576149 IGKV1D-8A0A087WSZ0 117 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 FAM230AA0A1W2PPH8 454 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 RRP8O43159 456 aaKnown RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 ANGPTL7O43827 346 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 SERPINA5P05154 406 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 GLRA1P23415 457 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 NUP62P37198 522 aaPredicted RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 RBP2P50120 134 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 TUSC1Q2TAM9 212 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 ANKRD55Q3KP44 614 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 RPUSD3Q6P087 351 aaKnown RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 MEX3BQ6ZN04 569 aaKnown RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 MOB3CQ70IA8 216 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 SKA3Q8IX90 412 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 EMG1Q92979 244 aaKnown RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 TMEM45BQ96B21 275 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 ZNF75AQ96N20 296 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 RGCCQ9H4X1 137 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 ZNF701Q9NV72 531 aaPredicted RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 BOKQ9UMX3 212 aaPredicted RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 CSAG2Q9Y5P2 127 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 MUC3AQ02505 3323 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 COL6A3P12111 3177 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 TEX46H3BTG2 121 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 LINC01387J3KSC0 135 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 SPRY1O43609 319 aaPredicted RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 ADAP1O75689 374 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 CSTBP04080 98 aaKnown RBP8.76□□□□□ -1.01
VPS53-220ENST00000576149 PRSS12P56730 875 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 RSU1Q15404 277 aa8.76□□□□□ -1.01
VPS53-220ENST00000576149 NKAPLQ5M9Q1 402 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms