RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 LINC00470Q9BZP3 86 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CHIAQ9BZP6 476 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 STRADBQ9C0K7 418 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CPVLQ9H3G5 476 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 SLC32A1Q9H598 525 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 TMEM231Q9H6L2 316 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ACTR8Q9H981 624 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 LRTM1Q9HBL6 345 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ZNF160Q9HCG1 818 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 RAB18Q9NP72 206 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 SLC7A10Q9NS82 523 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 MARCH4Q9P2E8 410 aaPredicted RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 THAP10Q9P2Z0 257 aaPredicted RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 GALPQ9UBC7 116 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 NAT8Q9UHE5 227 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 TBX21Q9UL17 535 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 TNFSF18Q9UNG2 199 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ASF1AQ9Y294 204 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 MEMO1Q9Y316 297 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 LSM2Q9Y333 95 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 CSDC2Q9Y534 153 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 PPIAL4AQ9Y536 164 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 OR51B2Q9Y5P1 312 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 MICAL3Q7RTP6 2002 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 DUOX1Q9NRD9 1551 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 BRCA1P38398 1863 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 GBF1Q92538 1859 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 ZNF106Q9H2Y7 1883 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 TRBV5-3A0A0A0MS03 114 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TRAV14DV4A0A0A6YYC5 116 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 A0A1W2PRS3 328 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 GXYLT2A0PJZ3 443 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 ARL5CA6NH57 179 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 C3orf70A6NLC5 250 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 IFITM5A6NNB3 132 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 HIDE1A8MVS5 230 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 F8VVB4 439 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 F8VWA3 439 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 H7BYZ3 331 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 J3QR06 171 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TNFRSF11BO00300 401 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 GABRPO00591 440 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 DHHO43323 396 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 OR1F1O43749 312 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 FCMRO60667 390 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 NME6O75414 186 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 CLDN11O75508 207 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 EEDO75530 441 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 CD160O95971 181 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 CST1P01037 141 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 MT-ND4P03905 459 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 OPN1SWP03999 348 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 CD74P04233 296 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SEMG1P04279 462 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SERPINA7P05543 415 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SERPIND1P05546 499 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 ANKRD34CP0C6C1 535 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TRGC1P0CF51 173 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 PGA3P0DJD8 388 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SLC25A4P12235 298 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TPT1P13693 172 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 ACHEP22303 614 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 GDF1P27539 372 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 ADORA2BP29275 332 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 CMPK1P30085 196 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 HTR1FP30939 366 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 OR1D2P34982 312 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 ACVR1BP36896 505 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SNCAP37840 140 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 FRKP42685 505 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 POLR2HP52434 150 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 MVDP53602 400 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 CRISP3P54108 245 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 DIO3P55073 304 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 PIGPP57054 158 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TAS2R43P59537 309 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TAS2R19P59542 299 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 PLP1P60201 277 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 UBE2KP61086 200 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 RPL15P61313 204 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 ERVK11-1P61568 191 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 BTN3A2P78410 334 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 SRPXP78539 464 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 AIMP2Q13155 320 aaKnown RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 FZD2Q14332 565 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 GNMTQ14749 295 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 EXT1Q16394 746 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TAZQ16635 292 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 CEACAM21Q3KPI0 293 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 RAB41Q5JT25 222 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 LRRC73Q5JTD7 316 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 FAM78BQ5VT40 261 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 OLFML2AQ68BL7 652 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 RTL6Q6ICC9 239 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 WDR74Q6RFH5 385 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 ZNF474Q6S9Z5 364 aaPredicted RBP2.82□□□□□ -1.96
VPS35-208ENST00000568612 APOOLQ6UXV4 268 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 FRRS1Q6ZNA5 592 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 C15orf39Q6ZRI6 1047 aa2.82□□□□□ -1.96
VPS35-208ENST00000568612 TEX26Q8N6G2 289 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms