RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 F8VWA3 439 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 J3QT63 122 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 INMTO95050 263 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 FSTL3O95633 263 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 PLATP00750 562 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 SERPINA3P01011 423 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 TGFAP01135 160 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 AMY2BP19961 511 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 MPZP25189 248 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 GABARAPL2P60520 117 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 MUC20Q8N307 709 aaPredicted RBP16.32■□□□□ 0.2
CLN3-225ENST00000566824 SPICQ8N5J4 248 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 LINC01356Q8N9X3 169 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 RFT1Q96AA3 541 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 OR14A2Q96R54 314 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 NKX3-1Q99801 234 aaPredicted RBP16.32■□□□□ 0.2
CLN3-225ENST00000566824 PCDHB10Q9UN67 800 aa16.32■□□□□ 0.2
CLN3-225ENST00000566824 NF1P21359 2839 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 A0A1W2PPK0 400 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 OCM2P0CE71 109 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 LCN2P80188 198 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 BDH1Q02338 343 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 CNN3Q15417 329 aaKnown RBP16.31■□□□□ 0.2
CLN3-225ENST00000566824 ZNF529Q6P280 563 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 ZNF573Q86YE8 665 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 SERPINA12Q8IW75 414 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 FGFRL1Q8N441 504 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 TMEM106AQ96A25 262 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 RAB39BQ96DA2 213 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 BORCS8Q96FH0 119 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 OPALINQ96PE5 141 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 BLOC1S6Q9UL45 172 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 LRRC42Q9Y546 428 aa16.31■□□□□ 0.2
CLN3-225ENST00000566824 TRBV5-7A0A0A0MS05 114 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 KIAA1324LA8MWY0 1029 aaPredicted RBP16.3■□□□□ 0.2
CLN3-225ENST00000566824 PIN1P1O15428 100 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 PHF1O43189 567 aaPredicted RBP16.3■□□□□ 0.2
CLN3-225ENST00000566824 CD1AP06126 327 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 HSMCR30P0CW71 290 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 PGA5P0DJD9 388 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 RPS2P15880 293 aaKnown RBP16.3■□□□□ 0.2
CLN3-225ENST00000566824 EMX1Q04741 257 aaPredicted RBP16.3■□□□□ 0.2
CLN3-225ENST00000566824 YIF1BQ5BJH7 314 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 LIPKQ5VXJ0 399 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 ZNF841Q6ZN19 808 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 POC1AQ8NBT0 407 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 DNAAF1Q8NEP3 725 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 SLAMF9Q96A28 289 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 TECTBQ96PL2 329 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 CCL13Q99616 98 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 ACOT13Q9NPJ3 140 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 MTCH1Q9NZJ7 389 aa16.3■□□□□ 0.2
CLN3-225ENST00000566824 TRAV8-7A0A075B6U6 113 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 TRAV38-1A0A0B4J264 116 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 MAGEA13PA6NCF6 341 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 B4DSR2 109 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 INAFM1C9JVW0 142 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 SPRY1O43609 319 aaPredicted RBP16.29■□□□□ 0.2
CLN3-225ENST00000566824 SULT1B1O43704 296 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 MSMBP08118 114 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 PRKACBP22694 351 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 RBP2P50120 134 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 MTCP1P56278 107 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 TBCEQ15813 527 aaPredicted RBP16.29■□□□□ 0.2
CLN3-225ENST00000566824 Q499Y3 187 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 STUMQ69YW2 141 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 DCDC5Q6ZRR9 648 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 SLC25A26Q70HW3 274 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 SPARTQ8N0X7 666 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 OR5D18Q8NGL1 313 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 OR5D14Q8NGL3 314 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 ZNF671Q8TAW3 534 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 NRIP2Q9BQI9 281 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 TMED9Q9BVK6 235 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 YTHDF1Q9BYJ9 559 aaKnown RBP16.29■□□□□ 0.2
CLN3-225ENST00000566824 PKIBQ9C010 78 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 SMURF1Q9HCE7 757 aa16.29■□□□□ 0.2
CLN3-225ENST00000566824 IGKV1-12A0A0C4DH73 117 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 ADAM20O43506 726 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 IGKV1D-12P01611 117 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 SELLP14151 372 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 IGFBP3P17936 291 aaPredicted RBP16.28■□□□□ 0.2
CLN3-225ENST00000566824 PCMT1P22061 227 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 GLRA1P23415 457 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 POU3F4P49335 361 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 ATP1B3P54709 279 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 GP2P55259 537 aaKnown RBP16.28■□□□□ 0.2
CLN3-225ENST00000566824 ERVK11-1P61568 191 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 RPS25P62851 125 aaKnown RBP16.28■□□□□ 0.2
CLN3-225ENST00000566824 IL24Q13007 206 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 TPBGQ13641 420 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 FAM27D1Q5T7N8 215 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 ACP7Q6ZNF0 438 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 FAM216BQ8N7L0 139 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 SPSB1Q96BD6 273 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 NEIL1Q96FI4 390 aaPredicted RBP16.28■□□□□ 0.2
CLN3-225ENST00000566824 DERL3Q96Q80 235 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 MGLLQ99685 303 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 MIOXQ9UGB7 285 aa16.28■□□□□ 0.2
CLN3-225ENST00000566824 IGKV1D-17A0A075B6S4 117 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms