RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 DOCK10Q96BY6 2186 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 ABCD4O14678 606 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 NME2P1O60361 137 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 CRYBA1P05813 215 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 SPP1P10451 314 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 PIGPP57054 158 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 SSBP1Q04837 148 aaKnown RBP13.08□□□□□ -0.32
CUX1-215ENST00000556210 CNN3Q15417 329 aaKnown RBP13.08□□□□□ -0.32
CUX1-215ENST00000556210 EXT1Q16394 746 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 ZNF684Q5T5D7 378 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 FNDC7Q5VTL7 733 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.08□□□□□ -0.32
CUX1-215ENST00000556210 OR13C8Q8NGS7 320 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 P4HTMQ9NXG6 502 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 CCDC187A0A096LP49 1063 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 CLPSP04118 112 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 ZNF529Q6P280 563 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 SLC25A28Q96A46 364 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 PLPPR2Q96GM1 343 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 NELFAQ9H3P2 528 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 KCNJ16Q9NPI9 418 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 TRAV39A0A0B4J263 110 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 RAB19A4D1S5 217 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 H3BP45 60 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 HSD17B6O14756 317 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 LRP3O75074 770 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 NFYBP25208 207 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 HAAOP46952 286 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 OR2B8PP59922 312 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 ZNF468Q5VIY5 522 aaPredicted RBP13.07□□□□□ -0.32
CUX1-215ENST00000556210 OR10D3Q8NH80 312 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 ST7LQ8TDW4 575 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 PHYHIPLQ96FC7 376 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 MCTS1Q9ULC4 181 aaKnown RBP13.07□□□□□ -0.32
CUX1-215ENST00000556210 MYO7BQ6PIF6 2116 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 OBSL1O75147 1896 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 A0A1B0GTQ1 180 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 CBR3O75828 277 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 TMEM128Q5BJH2 165 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 S100PBPQ96BU1 408 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 SYT3Q9BQG1 590 aa13.07□□□□□ -0.32
CUX1-215ENST00000556210 UTP23Q9BRU9 249 aaKnown RBP13.07□□□□□ -0.32
CUX1-215ENST00000556210 EFNA2O43921 213 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 ROM1Q03395 351 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 TLE1Q04724 770 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 LDLRAD3Q86YD5 345 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 ZNF319Q9P2F9 582 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 SHANK1Q9Y566 2161 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 G3V3Q6 166 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 CD1AP06126 327 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 HOXA1P49639 335 aaPredicted RBP13.06□□□□□ -0.32
CUX1-215ENST00000556210 DHODHQ02127 395 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 ACER2Q5QJU3 275 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 MKXQ8IYA7 352 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 GCNT2Q8N0V5 402 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 FOXB1Q99853 325 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 COLQQ9Y215 455 aaPredicted RBP13.06□□□□□ -0.32
CUX1-215ENST00000556210 C5orf63A6NC05 138 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 SUMO3P55854 103 aaPredicted RBP13.06□□□□□ -0.32
CUX1-215ENST00000556210 RAB2AP61019 212 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 PJVKQ0ZLH3 352 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 PIGYQ3MUY2 71 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 CDCP2Q5VXM1 449 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 JMJD6Q6NYC1 403 aaPredicted RBP13.06□□□□□ -0.32
CUX1-215ENST00000556210 DEGS2Q6QHC5 323 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 CLEC18BQ6UXF7 455 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 TLNRD1Q9H1K6 362 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 UQCC1Q9NVA1 299 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 PCNX3Q9H6A9 2034 aa13.06□□□□□ -0.32
CUX1-215ENST00000556210 ALPK3Q96L96 1907 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 IFNA2P01563 188 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 SCAND1P57086 179 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 EIF2S3LQ2VIR3 472 aaKnown RBP13.05□□□□□ -0.32
CUX1-215ENST00000556210 IGSF11Q5DX21 431 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 SFT2D1Q8WV19 159 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 AKR1E2Q96JD6 320 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 SUCNR1Q9BXA5 334 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 UCK1Q9HA47 277 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 PUS1Q9Y606 427 aaKnown RBP eCLIP13.05□□□□□ -0.32
CUX1-215ENST00000556210 HSPB2A8KAH6 182 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 GPM6AP51674 278 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 DSCR4P56555 118 aaPredicted RBP13.05□□□□□ -0.32
CUX1-215ENST00000556210 UNC119Q13432 240 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 HSPB2Q16082 182 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 OR2B11Q5JQS5 317 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 C6orf15Q6UXA7 325 aaPredicted RBP13.05□□□□□ -0.32
CUX1-215ENST00000556210 Q6ZRG5 221 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 OR5T1Q8NG75 326 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 OR6X1Q8NH79 312 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 FAM213BQ8TBF2 198 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 RTN4IP1Q8WWV3 396 aaPredicted RBP13.05□□□□□ -0.32
CUX1-215ENST00000556210 ALX4Q9H161 411 aaPredicted RBP13.05□□□□□ -0.32
CUX1-215ENST00000556210 ZNF286AQ9HBT8 521 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 C1orf123Q9NWV4 160 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 BOKQ9UMX3 212 aaPredicted RBP13.05□□□□□ -0.32
CUX1-215ENST00000556210 FLVCR1Q9Y5Y0 555 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 TICRRQ7Z2Z1 1910 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 LOC102725191A0A1B0GVB3 256 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 OR6C65A6NJZ3 312 aa13.05□□□□□ -0.32
CUX1-215ENST00000556210 TRAPPC2LH3BP13 241 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms