RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 TAS2R8Q9NYW2 309 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 ZANQ9Y493 2812 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 IGKV1-9A0A0C4DH69 117 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 C7orf66A4D0T2 115 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 METTL21EPA6NDL7 271 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 MEIS3P1A6NDR6 274 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 OR6C65A6NJZ3 312 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 ZNF587BE7ETH6 402 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 ARID1AO14497 2285 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 MTRF1O75570 445 aaKnown RBP10.28□□□□□ -0.76
CLIP1-208ENST00000537004 PPP3CBP16298 524 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 FAHP16930 419 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 DNASE1P24855 282 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 THBS4P35443 961 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 HTR5AP47898 357 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 RAG2P55895 527 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 KRTAP27-1Q3LI81 207 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 ZFP69Q49AA0 526 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 USF3Q68DE3 2245 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 SEZ6L2Q6UXD5 910 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 Q6ZSR3 168 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 GPX8Q8TED1 209 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 DEDD2Q8WXF8 326 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 RNF170Q96K19 258 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 FYTTD1Q96QD9 318 aaKnown RBP10.28□□□□□ -0.76
CLIP1-208ENST00000537004 GHITMQ9H3K2 345 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 PIGLQ9Y2B2 252 aa10.28□□□□□ -0.76
CLIP1-208ENST00000537004 MRPS28Q9Y2Q9 187 aaKnown RBP10.28□□□□□ -0.76
CLIP1-208ENST00000537004 NF1P21359 2839 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 RPL36A-HNRNPH2H7BZ11 118 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 LPLP06858 475 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 MMP7P09237 267 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-208ENST00000537004 COX5AP20674 150 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 FAUP35544 74 aaKnown RBP10.27□□□□□ -0.77
CLIP1-208ENST00000537004 OR3A4PP47883 348 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 ARF1P84077 181 aaKnown RBP10.27□□□□□ -0.77
CLIP1-208ENST00000537004 SSBP1Q04837 148 aaKnown RBP10.27□□□□□ -0.77
CLIP1-208ENST00000537004 BEX5Q5H9J7 111 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 RAB12Q6IQ22 244 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 CCDC54Q8NEL0 328 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 OR2AE1Q8NHA4 323 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 PP6455Q8WZ26 134 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 SGK3Q96BR1 496 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 SEH1LQ96EE3 360 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 CHST5Q9GZS9 411 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 ZMAT3Q9HA38 289 aaKnown RBP10.27□□□□□ -0.77
CLIP1-208ENST00000537004 SCPEP1Q9HB40 452 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 NKIRAS2Q9NYR9 191 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 FBLN5Q9UBX5 448 aa10.27□□□□□ -0.77
CLIP1-208ENST00000537004 RAB27BO00194 218 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 SULT1C2O00338 296 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 GOSR1O95249 250 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 LCATP04180 440 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 NAT1P18440 290 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 ACTBP60709 375 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 ACTG1P63261 375 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 MRPS15P82914 257 aaKnown RBP10.26□□□□□ -0.77
CLIP1-208ENST00000537004 GSG1Q2KHT4 349 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 DMRTC1Q5HYR2 192 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 GLIPR1L1Q6UWM5 242 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 UTS2BQ765I0 119 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 IQCF2Q8IXL9 164 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF101Q8IZC7 436 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 OR4C16Q8NGL9 310 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 SUN5Q8TC36 379 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 NEUROG1Q92886 237 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 NINJ1Q92982 152 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 C10orf35Q96D05 121 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 C1orf147Q96MC9 270 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-208ENST00000537004 GPER1Q99527 375 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF224Q9NZL3 707 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 TMA7Q9Y2S6 64 aaKnown RBP10.26□□□□□ -0.77
CLIP1-208ENST00000537004 TMEM235A6NFC5 223 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 TMEM14DPA8MWL7 114 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 PEX14O75381 377 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 CRYZL1O95825 349 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 GTF2F2P13984 249 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 UBE2V2Q15819 145 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 PABPC1L2AQ5JQF8 200 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 SPNS3Q6ZMD2 512 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 OR2W3Q7Z3T1 314 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 NPRL2Q8WTW4 380 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 GIMAP1Q8WWP7 306 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 CMBLQ96DG6 245 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 REEP6Q96HR9 211 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 C1QTNF6Q9BXI9 259 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 MED28Q9H204 178 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 OR51J1Q9H342 316 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 UPB1Q9UBR1 384 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 ELF5Q9UKW6 265 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-208ENST00000537004 FLVCR2Q9UPI3 526 aa10.26□□□□□ -0.77
CLIP1-208ENST00000537004 A0A096LPE4 126 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 A0A1W2PPZ6 126 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 DPRXA6NFQ7 191 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 DHRS7CA6NNS2 312 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 SCGNO76038 276 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 CNOT4O95628 575 aaKnown RBP10.25□□□□□ -0.77
CLIP1-208ENST00000537004 FCER2P06734 321 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 AKAIN1P0CW23 69 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 P2RX3P56373 397 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms