RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 TMEM164Q5U3C3 297 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 C5orf17Q8NAS9 161 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 OR10Q1Q8NGQ4 319 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 PHOSPHO1Q8TCT1 267 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 TMEM186Q96B77 213 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 ZMYND19Q96E35 227 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 SEC22AQ96IW7 307 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 MRGPRX2Q96LB1 330 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 S1PR3Q99500 378 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 RTP3Q9BQQ7 232 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 GPR88Q9GZN0 384 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 SLIRPQ9GZT3 109 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 AICDAQ9GZX7 198 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 SH2D2AQ9NP31 389 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CISD1Q9NZ45 108 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 DHCR7Q9UBM7 475 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 A0A1W2PNV4 684 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 A6NCN8 305 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 A8MWL6 223 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 RBFOX2O43251 390 aaKnown RBP eCLIP3.22□□□□□ -1.89
USP53-205ENST00000509769 PITX3O75364 302 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 ATP5LO75964 103 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 IGHG1P01857 330 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 C8orf89P0DMQ9 161 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CXCL8P10145 99 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 FBLN1P23142 703 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 APLNRP35414 380 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CDKN1BP46527 198 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 EMP3P54852 163 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 SKP2Q13309 424 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 SGCBQ16585 318 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 FAM110CQ1W6H9 321 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 Q56UQ5 140 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 GCSAMLQ5JQS6 135 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 C1orf185Q5T7R7 199 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 Q6AWC8 147 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 ASTLQ6HA08 431 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 RGS7BPQ6MZT1 257 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 RNF165Q6ZSG1 346 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 RTN4RL1Q86UN2 441 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 TMEM123Q8N131 208 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 LIPHQ8WWY8 451 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 PTX4Q96A99 478 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 SNX22Q96L94 193 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 ARHGAP9Q9BRR9 750 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 DEFB129Q9H1M3 183 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 RNF167Q9H6Y7 350 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 MMP25Q9NPA2 562 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CBLN4Q9NTU7 201 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 TMEM160Q9NX00 188 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 TNFSF18Q9UNG2 199 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 PAM16Q9Y3D7 125 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 TIMM9Q9Y5J7 89 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 TMEM269A0A1B0GVZ9 245 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 C17orf51A8MQB3 221 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 TMEM250H0YL14 139 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 MKRN2OSH3BPM6 223 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 M0R3E3 92 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 NEURL1O76050 574 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 S1PR2O95136 353 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CXorf1O96002 111 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 VTNP04004 478 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CTSDP07339 412 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 HOXD4P09016 255 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 ICAM2P13598 275 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 AGAP20933 346 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 KIR2DL1P43626 348 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 KIR2DL2P43627 348 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 GLIPR1P48060 266 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 HMGA2P52926 109 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CASP7P55210 303 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 GAGE5Q13069 117 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 GAGE6Q13070 117 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 XKR7Q5GH72 579 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 FBXL22Q6P050 247 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 DNM1P46Q6ZS02 220 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 ANKRD37Q7Z713 158 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 OR4F17Q8NGA8 305 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 OR4P4Q8NGL7 312 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 OR52I2Q8NH67 350 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 SECTM1Q8WVN6 248 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 GHSRQ92847 366 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 ULBP2Q9BZM5 246 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 SELENOIQ9C0D9 397 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 RAB1BQ9H0U4 201 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 ZNF385DQ9H6B1 395 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 PRSS16Q9NQE7 514 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 SPHK2Q9NRA0 654 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 TMEM242Q9NWH2 141 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 ZNF835Q9Y2P0 537 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 PTRH2Q9Y3E5 179 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 AUP1Q9Y679 476 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 A0A0G2JMM0 328 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 A0A1W2PPB8 328 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 A0A1W2PQM1 296 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 ZAR1LA6NP61 321 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 KIR3DP1A8MWS1 328 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 ERI3O43414 337 aaKnown RBP3.21□□□□□ -1.9
USP53-205ENST00000509769 COX7A2P2O60397 106 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 YPEL1O60688 119 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms