RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 GLYATL3Q5SZD4 288 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 OGFOD2Q6N063 350 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 KCTD8Q6ZWB6 473 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 CCDC80Q76M96 950 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 ZNF575Q86XF7 245 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 OR6V1Q8N148 313 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 OR6T1Q8NGN1 323 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 PFN4Q8NHR9 129 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 ZNF671Q8TAW3 534 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 RASSF5Q8WWW0 418 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 RGP1Q92546 391 aaPredicted RBP6.17□□□□□ -1.42
USP54-211ENST00000474929 DLX4Q92988 240 aaPredicted RBP6.17□□□□□ -1.42
USP54-211ENST00000474929 SPSB4Q96A44 273 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 RSRP1Q9BUV0 290 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 TINAGL1Q9GZM7 467 aaPredicted RBP6.17□□□□□ -1.42
USP54-211ENST00000474929 KRCC1Q9NPI7 259 aaPredicted RBP6.17□□□□□ -1.42
USP54-211ENST00000474929 NKIRAS1Q9NYS0 192 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 MRM2Q9UI43 246 aaKnown RBP6.17□□□□□ -1.42
USP54-211ENST00000474929 COA3Q9Y2R0 106 aaPredicted RBP6.17□□□□□ -1.42
USP54-211ENST00000474929 DNAH2Q9P225 4427 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 CLIC1O00299 241 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 SPARCP09486 303 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 NUDT7P0C024 238 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 KITP10721 976 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 PIPP12273 146 aaPredicted RBP6.16□□□□□ -1.42
USP54-211ENST00000474929 SLC9A3P48764 834 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 KRR1Q13601 381 aaKnown RBP6.16□□□□□ -1.42
USP54-211ENST00000474929 SCARB2Q14108 478 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 RSPO1Q2MKA7 263 aaPredicted RBP6.16□□□□□ -1.42
USP54-211ENST00000474929 FAM76BQ5HYJ3 339 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 SOHLH1Q5JUK2 328 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 TPTE2P1Q5T6R2 138 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 GDPD3Q7L5L3 318 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 HDXQ7Z353 690 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 TSPYL5Q86VY4 417 aaPredicted RBP6.16□□□□□ -1.42
USP54-211ENST00000474929 TGIF2LXQ8IUE1 241 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 LAX1Q8IWV1 398 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 Q8N402 240 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 GVQW1Q8N7I0 195 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 PHLDA1Q8WV24 401 aaPredicted RBP6.16□□□□□ -1.42
USP54-211ENST00000474929 RPL3LQ92901 407 aaKnown RBP6.16□□□□□ -1.42
USP54-211ENST00000474929 FLYWCH2Q96CP2 140 aaKnown RBP6.16□□□□□ -1.42
USP54-211ENST00000474929 TLCD1Q96CP7 247 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 SORT1Q99523 831 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 PRSS27Q9BQR3 290 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 WFDC6Q9BQY6 131 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 ABCG5Q9H222 651 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 SYT4Q9H2B2 425 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 RERGLQ9H628 205 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 TMEM38AQ9H6F2 299 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 YY1AP1Q9H869 796 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 AIG1Q9NVV5 245 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 RAP2CQ9Y3L5 183 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 AMMECR1Q9Y4X0 333 aaPredicted RBP6.16□□□□□ -1.42
USP54-211ENST00000474929 LINC00312Q9Y6C7 94 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 WSB1Q9Y6I7 421 aa6.16□□□□□ -1.42
USP54-211ENST00000474929 FAM90A18PA6NE21 464 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 ARRDC5A6NEK1 342 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 FAM90A16PA6NEW6 464 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 FAM90A20PA6NIJ5 464 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 RFPL4AA6NLU0 287 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 FAM90A9PA6NNJ1 464 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 FAM90A12PA8MX19 464 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 FAM90A5PA8MXJ8 464 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 RFPL4AL1F8VTS6 287 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 TFF1P04155 84 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 CD14P08571 375 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 FAM90A15PP0C7V4 464 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 FAM90A13PP0C7W8 464 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 FAM90A14PP0C7W9 464 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 FAM90A24PP0C7X0 464 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 OTX1P32242 354 aaPredicted RBP6.15□□□□□ -1.42
USP54-211ENST00000474929 IFNA8P32881 189 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 GDNFP39905 211 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 NME5P56597 212 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 EDDM3BP56851 147 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 UFM1P61960 85 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 GNB1P62873 340 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 PRR20EP86478 221 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 PRR20CP86479 221 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 PRR20DP86480 221 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 PRR20BP86481 221 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 PRR20AP86496 221 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 CFHR3Q02985 330 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 MESTQ5EB52 335 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 SLC18B1Q6NT16 456 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 CORO6Q6QEF8 472 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 OAFQ86UD1 273 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 WFDC3Q8IUB2 231 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 ABHD12Q8N2K0 398 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 ZNF491Q8N8L2 437 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 TMEM255BQ8WV15 326 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 TOMM40LQ969M1 308 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 RPEQ96AT9 228 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 VPS33AQ96AX1 596 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 BPIFA2Q96DR5 249 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 WDR89Q96FK6 387 aaPredicted RBP6.15□□□□□ -1.42
USP54-211ENST00000474929 FAM46AQ96IP4 442 aaKnown RBP6.15□□□□□ -1.42
USP54-211ENST00000474929 HIST1H2AAQ96QV6 131 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 MFFQ9GZY8 342 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms