RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 WRAP73Q9P2S5 460 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-210ENST00000468534 OR12D3Q9UGF7 316 aa3.95□□□□□ -1.78
CCDC88A-210ENST00000468534 LSM5Q9Y4Y9 91 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-210ENST00000468534 PRSS21Q9Y6M0 314 aa3.95□□□□□ -1.78
CCDC88A-210ENST00000468534 ARAP1Q96P48 1450 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 A0A1W2PP64 1363 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 PALLDQ8WX93 1383 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 DAPL1A0PJW8 107 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 OR4C46A6NHA9 309 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 LYRM9A8MSI8 78 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 EVPLLA8MZ36 301 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 C16orf97H3BN30 126 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 M0R1B8 84 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 MBTPS2O43462 519 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 LYPLA1O75608 230 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 GAGE7O76087 117 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 CLDN1O95832 211 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 TBX6O95947 436 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 SEMG1P04279 462 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 OR5AL1P0C617 328 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 GAGE12FP0CL80 117 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 GAGE12GP0CL81 117 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 GAGE12IP0CL82 117 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 PVRP15151 417 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 MYOD1P15172 320 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 MUC1P15941 1255 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 NELFEP18615 380 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 MYL12AP19105 171 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 PSMB1P20618 241 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 IL12AP29459 219 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 HSPA9P38646 679 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 CDKN2BP42772 138 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 RORCP51449 518 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 UBE2E1P51965 193 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 BRWD1-AS2P59051 145 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 SEC61BP60468 96 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 PPP1CBP62140 327 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF155Q12901 538 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 GAGE4Q13068 117 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 MFAP5Q13361 173 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 RAB35Q15286 201 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 C14orf177Q52M58 125 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 SFXN4Q6P4A7 337 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 TNFAIP8L2Q6P589 184 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 HAGHLQ6PII5 290 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 OPN5Q6U736 354 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 PAMR1Q6UXH9 720 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 FAM231DQ6ZW35 169 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 COMMD7Q86VX2 200 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 DOLPP1Q86YN1 238 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 RDH10Q8IZV5 341 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF283Q8N7M2 679 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF614Q8N883 585 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 OR4K17Q8NGC6 315 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 OR51S1Q8NGJ8 323 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 OR5AR1Q8NGP9 310 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 OR1L8Q8NGR8 309 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 OR8U1Q8NH10 309 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 OLIG1Q8TAK6 271 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 FBXO25Q8TCJ0 367 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 PHLDA1Q8WV24 401 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 ASB13Q8WXK3 278 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 RDH5Q92781 318 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 IL22RA2Q969J5 263 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 CLDN23Q96B33 292 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 DDIT4LQ96D03 193 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 HSFY1Q96LI6 401 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 DNAJC30Q96LL9 226 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 UBE2E2Q96LR5 201 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 PPP3R2Q96LZ3 170 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 CMSS1Q9BQ75 279 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 TBL1XR1Q9BZK7 514 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 FNDC4Q9H6D8 234 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF442Q9H7R0 627 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 REEP1Q9H902 201 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 COPZ2Q9P299 210 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 GLS2Q9UI32 602 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 CES1P1Q9UKY3 287 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 NCOA1Q15788 1441 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 RIMS2Q9UQ26 1411 aa3.94□□□□□ -1.78
CCDC88A-210ENST00000468534 SPATA31D1Q6ZQQ2 1576 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 PLEKHH1Q9ULM0 1364 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 A0A1W2PPI3 338 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 MEIOCA2RUB1 952 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 ARL5CA6NH57 179 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 OR5H14A6NHG9 310 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 FAM166BA8MTA8 275 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 TRIM49D1C9J1S8 452 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 K7EMT4 169 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 TP53I11O14683 189 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 MFSD11O43934 449 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 STK16O75716 305 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 SOX14O95416 240 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 IGHV2-5P01817 119 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 ARG1P05089 322 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 LGALS2P05162 132 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 TSPAN19P0C672 248 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 PAX1P15863 534 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 GABRG2P18507 467 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 CHRNB4P30926 498 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms