RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CACNG2Q9Y698 323 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 V9GY05 133 aa13.31□□□□□ -0.28
USP40-206ENST00000443711 SHISA3A0PJX4 238 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 SYNGR1O43759 233 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 NOL3O60936 208 aaKnown RBP13.3□□□□□ -0.28
USP40-206ENST00000443711 RP2O75695 350 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 CDRT1O95170 752 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 PLATP00750 562 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 ACAA1P09110 424 aaPredicted RBP13.3□□□□□ -0.28
USP40-206ENST00000443711 CSF3P09919 207 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 CD37P11049 281 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 SDC2P34741 201 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 PTGFRP43088 359 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 TMEM33P57088 247 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 ZP1P60852 638 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 CTF1Q16619 201 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 CRIP3Q6Q6R5 217 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 LYPD6Q86Y78 171 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 TGIF2LYQ8IUE0 185 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 SAXO1Q8IYX7 474 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 ZSCAN4Q8NAM6 433 aaPredicted RBP13.3□□□□□ -0.28
USP40-206ENST00000443711 OR5D18Q8NGL1 313 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 OR51F2Q8NH61 342 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 RAB2BQ8WUD1 216 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 LRRC29Q8WV35 223 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 BCL7BQ9BQE9 202 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 UQCC2Q9BRT2 126 aa13.3□□□□□ -0.28
USP40-206ENST00000443711 CLDN25C9JDP6 229 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 TRAPPC2LH3BP13 241 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 TMEM178BH3BS89 294 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 SPRY1O43609 319 aaPredicted RBP13.29□□□□□ -0.28
USP40-206ENST00000443711 NOS1APO75052 506 aaPredicted RBP13.29□□□□□ -0.28
USP40-206ENST00000443711 RHBDL1O75783 438 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 CYB5R3P00387 301 aaPredicted RBP13.29□□□□□ -0.28
USP40-206ENST00000443711 RANBP1P43487 201 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 DSCR9P59020 149 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 VBP1P61758 197 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 NCS1P62166 190 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 C1orf100Q5SVJ3 147 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 CLEC2AQ6UVW9 174 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 PEG10Q86TG7 708 aaKnown RBP13.29□□□□□ -0.28
USP40-206ENST00000443711 ZNF525Q8N782 197 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 BOLLQ8N9W6 283 aaKnown RBP13.29□□□□□ -0.28
USP40-206ENST00000443711 POC1AQ8NBT0 407 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 PXT1Q8NFP0 134 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 TNFAIP8L1Q8WVP5 186 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 S100A13Q99584 98 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 GFI1Q99684 422 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 CNTD2Q9H8S5 307 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 ING4Q9UNL4 249 aa13.29□□□□□ -0.28
USP40-206ENST00000443711 CYSRT1A8MQ03 144 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 SRRM5B3KS81 715 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 LHBP01229 141 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 IL1AP01583 271 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 PGA5P0DJD9 388 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 TGFBR1P36897 503 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 OR3A4PP47883 348 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 MXD1Q05195 221 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 RIN1Q13671 783 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 ASCL4Q6XD76 172 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 Q8IYB0 196 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 GCSAMQ8N6F7 178 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 OR6M1Q8NGM8 313 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 FAM168AQ92567 244 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 RAB1CQ92928 201 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 SLAMF9Q96A28 289 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 TIMD4Q96H15 378 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 CEP19Q96LK0 163 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 NKX3-1Q99801 234 aaPredicted RBP13.28□□□□□ -0.28
USP40-206ENST00000443711 FAM192AQ9GZU8 254 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 PLGRKTQ9HBL7 147 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 DCAF16Q9NXF7 216 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 RASL12Q9NYN1 266 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 MTCH1Q9NZJ7 389 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 NDUFA13Q9P0J0 144 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 MRPS28Q9Y2Q9 187 aaKnown RBP13.28□□□□□ -0.28
USP40-206ENST00000443711 CEPT1Q9Y6K0 416 aa13.28□□□□□ -0.28
USP40-206ENST00000443711 PDZD2O15018 2839 aa13.27□□□□□ -0.28
USP40-206ENST00000443711 NBPF19A0A087WUL8 3843 aa13.27□□□□□ -0.28
USP40-206ENST00000443711 CCDC160A6NGH7 325 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 NOTOA8MTQ0 251 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 NDUFS8O00217 210 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 SLC17A2O00624 439 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 PPIHO43447 177 aaKnown RBP13.27□□□□□ -0.29
USP40-206ENST00000443711 AKR7A2O43488 359 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 ANGPTL7O43827 346 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 CLEC2LP0C7M8 214 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 GLRA1P23415 457 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 GIFP27352 417 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 HTR2CP28335 458 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 GPR6P46095 362 aaPredicted RBP13.27□□□□□ -0.29
USP40-206ENST00000443711 SERPINB10P48595 397 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 OR10A3P58181 314 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 RSU1Q15404 277 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 CLEC12BQ2HXU8 276 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 PRSS57Q6UWY2 283 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 C1QL2Q7Z5L3 287 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 OR4D6Q8NGJ1 314 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 ZNF488Q96MN9 340 aa13.27□□□□□ -0.29
USP40-206ENST00000443711 FOXC2Q99958 501 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms