RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 SIRT4Q9Y6E7 314 aaPredicted RBP15.54■□□□□ 0.08
SHH-203ENST00000435425 WNK2Q9Y3S1 2297 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 LOC105371242A0A075B767 164 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 A0A1B0GW55 424 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 MYL12BO14950 172 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 LALBAP00709 142 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 DUX4L2P0CJ85 424 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 DUX4L3P0CJ86 424 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 DUX4L4P0CJ87 422 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 DUX4L5P0CJ88 424 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 DUX4L6P0CJ89 424 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 DUX4L7P0CJ90 424 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 ATF1P18846 271 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 SOX2P48431 317 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 HSPA13P48723 471 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 CDK5R1Q15078 307 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 DUX4L9Q6RFH8 374 aaPredicted RBP15.53■□□□□ 0.08
SHH-203ENST00000435425 PRIMA1Q86XR5 153 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 CALHM1Q8IU99 346 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 OR52N1Q8NH53 320 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 CNBD2Q96M20 576 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 SMURF1Q9HCE7 757 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 NLKQ9UBE8 527 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 DUX4Q9UBX2 424 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 DHDHQ9UQ10 334 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 INSIG2Q9Y5U4 225 aa15.53■□□□□ 0.08
SHH-203ENST00000435425 NF1P21359 2839 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 IGKV1-27A0A075B6S5 117 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 IGKV1-9A0A0C4DH69 117 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 PNMA8CA0A1B0GUJ8 204 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 J3QLI3 93 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 DVL1O14640 695 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 ADRA2CP18825 462 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 GATA3P23771 443 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 AZGP1P25311 298 aaKnown RBP15.52■□□□□ 0.08
SHH-203ENST00000435425 VHLP40337 213 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 GABRA2P47869 451 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 ATP1B3P54709 279 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 IKZF1Q13422 519 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 CCDC58Q4VC31 144 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 STUMQ69YW2 141 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 C1orf229Q6ZS94 237 aaPredicted RBP15.52■□□□□ 0.08
SHH-203ENST00000435425 FGFRL1Q8N441 504 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 FAM216BQ8N7L0 139 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 POC1AQ8NBT0 407 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 OR13C9Q8NGT0 318 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 ST8SIA4Q92187 359 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 ANKRD60Q9BZ19 345 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 FKBP14Q9NWM8 211 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 POLDIP2Q9Y2S7 368 aa15.52■□□□□ 0.08
SHH-203ENST00000435425 POLR3KQ9Y2Y1 108 aaPredicted RBP15.52■□□□□ 0.08
SHH-203ENST00000435425 PPIAL4CA0A0B4J2A2 164 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 NKX6-3A6NJ46 265 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 OR2AT4A6NND4 320 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 OGG1O15527 345 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 CDK1P06493 297 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 AMY2BP19961 511 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 NPY4RP50391 375 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 MTCP1P56278 107 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 UTS2BQ765I0 119 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 SLC36A1Q7Z2H8 476 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 RAB40AQ8WXH6 277 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 RGP1Q92546 391 aaPredicted RBP15.51■□□□□ 0.07
SHH-203ENST00000435425 SGCDQ92629 289 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 MYDGFQ969H8 173 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 SLAMF9Q96A28 289 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 RFT1Q96AA3 541 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 C12orf43Q96C57 262 aaKnown RBP15.51■□□□□ 0.07
SHH-203ENST00000435425 NUDT16L1Q9BRJ7 211 aaKnown RBP15.51■□□□□ 0.07
SHH-203ENST00000435425 MRI1Q9BV20 369 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 ZCCHC4Q9H5U6 513 aa15.51■□□□□ 0.07
SHH-203ENST00000435425 IGHV2-70DA0A0C4DH43 119 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 NDUFB3O43676 98 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 FCN3O75636 299 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 NXPH2O95156 264 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 RPSAP08865 295 aaKnown RBP15.5■□□□□ 0.07
SHH-203ENST00000435425 PGA5P0DJD9 388 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 SELLP14151 372 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 PRKACBP22694 351 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 POU3F4P49335 361 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 RBP2P50120 134 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 BTNL3Q6UXE8 466 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 ACP7Q6ZNF0 438 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 SLC25A26Q70HW3 274 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 SERPINA12Q8IW75 414 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 NANOGP1Q8N7R0 232 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 ZNF485Q8NCK3 441 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 ANGPTL6Q8NI99 470 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 GPR148Q8TDV2 347 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 OPALINQ96PE5 141 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 SPACA5Q96QH8 159 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 PKIBQ9C010 78 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 PAK1IP1Q9NWT1 392 aaPredicted RBP15.5■□□□□ 0.07
SHH-203ENST00000435425 RASL12Q9NYN1 266 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 KAAG1Q9UBP8 84 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 OPN4Q9UHM6 478 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 ERGIC3Q9Y282 383 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 TPRKBQ9Y3C4 175 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 AUP1Q9Y679 476 aa15.5■□□□□ 0.07
SHH-203ENST00000435425 C22orf46C9J442 243 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms