RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TECRQ9NZ01 308 aaKnown RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 OR6C3Q9NZP0 311 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 TAAR2Q9P1P5 351 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 ANK1P16157 1881 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 IGKV6-21A0A0C4DH24 114 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 LDB3O75112 727 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 CLDN17P56750 224 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 YBX1P67809 324 aaKnown RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 ACKR1Q16570 336 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 TAS1R1Q7RTX1 841 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 LRP10Q7Z4F1 713 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 TMEM99Q8N816 258 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 WNT6Q9Y6F9 365 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 MDC1Q14676 2089 aaKnown RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 ALS2Q96Q42 1657 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 PMS2P1A4D2B8 440 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 SMPD2O60906 423 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 OTX2P32243 289 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 IER5LQ5T953 404 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 OR2V2Q96R30 315 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 HS3ST2Q9Y278 367 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 YPEL5P62699 121 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 DSC1Q08554 894 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 LYSMD4Q5XG99 296 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 OSR2Q8N2R0 312 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 OR5R1Q8NH85 324 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 NTNG1Q9Y2I2 539 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 CEP250Q9BV73 2442 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 HSPB1P04792 205 aaKnown RBP11.61□□□□□ -0.55
COL6A3-206ENST00000409809 FUT3P21217 361 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 ACVR1Q04771 509 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 TMEM176BQ3YBM2 270 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-206ENST00000409809 HES4Q9HCC6 221 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 P4HTMQ9NXG6 502 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 FANCMQ8IYD8 2048 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 BCORQ6W2J9 1755 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 TMEM262E9PQX1 116 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 PPP2CAP67775 309 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 GDF6Q6KF10 455 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-206ENST00000409809 PTX4Q96A99 478 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 IGSF21Q96ID5 467 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 ASB16Q96NS5 453 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 MIXL1Q9H2W2 232 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 CD207Q9UJ71 328 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 H3BVH4 76 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 M0R135 149 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 MEX3DQ86XN8 651 aaKnown RBP11.61□□□□□ -0.55
COL6A3-206ENST00000409809 C10orf126Q8N4M7 172 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 ZNF511Q8NB15 262 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 OR52E1Q8NGJ3 308 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 ZNF799Q96GE5 643 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 TINAGL1Q9GZM7 467 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-206ENST00000409809 FUT9Q9Y231 359 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 CXorf51AA0A1B0GTR3 108 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 A0A1W2PP55 124 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 M0R296 226 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 RER1O15258 196 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 IGHA1P01876 353 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 IGHA2P01877 340 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 SUMO3P55854 103 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-206ENST00000409809 C21orf58P58505 322 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 TCTN3Q6NUS6 607 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 OR10X1Q8NGY0 326 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 RELTQ969Z4 430 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 LAT2Q9GZY6 243 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 POLR2GP62487 172 aaKnown RBP eCLIP11.61□□□□□ -0.55
COL6A3-206ENST00000409809 GGACTQ9BVM4 153 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 SPANXDQ9BXN6 97 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 KCNK7Q9Y2U2 307 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 NTSR1P30989 418 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 SLC6A12P48065 614 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 SSR4P51571 173 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 CRYABP02511 175 aaKnown RBP11.61□□□□□ -0.55
COL6A3-206ENST00000409809 CTSDP07339 412 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-206ENST00000409809 BCL2P10415 239 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 ZBTB25P24278 435 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 CLN3Q13286 438 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 SLC39A5Q6ZMH5 540 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 TMEM116Q8NCL8 245 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 PFN4Q8NHR9 129 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 ADTRPQ96IZ2 230 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 GDE1Q9NZC3 331 aa11.61□□□□□ -0.55
COL6A3-206ENST00000409809 WNT1P04628 370 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 SRYQ05066 204 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 ELAVL1Q15717 326 aaKnown RBP11.6□□□□□ -0.55
COL6A3-206ENST00000409809 NEU3Q9UQ49 428 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 ST3GAL6Q9Y274 331 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 A0A0B4J293 547 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 SEMA4FO95754 770 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 TMEM11P17152 192 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 DLX1P56177 255 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 OR1L6Q8NGR2 347 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 MS4A3Q96HJ5 214 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 GPR84Q9NQS5 396 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 PRSS1P07477 247 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 S100A4P26447 101 aaKnown RBP11.6□□□□□ -0.55
COL6A3-206ENST00000409809 SFRP2Q96HF1 295 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 MASP2O00187 686 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 CTNSO60931 367 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms